BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944513
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34020.1 | Symbols: | Class I glutamine amidotransferase-li... 2309 0.0
> AT4G34020.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr4:16298262-16300938 REVERSE LENGTH=1751
Length=1751
Score = 2309 bits (1250), Expect = 0.0
Identities = 1392/1461 (95%), Gaps = 7/1461 (0%)
Strand=Plus/Plus
Query 1 TGCTGCATTAGCAATCGGCAATGGGGTCCTTAGGTTTTTCGATTTCAATGATAGCTTCGT 60
|||||||||||| |||| |||||||||| ||||| | ||||||||||||||||||||||
Sbjct 22 TGCTGCATTAGCTATCGTCAATGGGGTCTTTAGGATATTCGATTTCAATGATAGCTTCGC 81
Query 61 TGAGTCCAACTTTGATGGAGTCGAGGCTTATCTCTTCGATGGGTTGTGTCTCGACGATTG 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 82 TGAGTCCAACTTTGATGGAGTCAAGGCTTATCTCTTCGATGGGTTGTGTCTCGATGACTG 141
Query 121 TTGCTCCGAGTTTGTCTTCAGTCTCTGTGGTTTCTTCTTCACCAGGGACAAGAAGGAGGG 180
||||||| ||||| |||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 142 TTGCTCCTAGTTTTTCTTCAGTCTCTGTAGTTTCTTCTTCACTAGGGACAACAAGGAGGG 201
Query 181 ACCGAAATTTAAGGCTCAGATCTTCCATGTCACCAAGTATGGTAACAACGTC-AGATTCC 239
|||||| ||||| ||| |||||||||||||| || |||||||||||||| | |||||||
Sbjct 202 ACCGAACTTTAAAGCTTAGATCTTCCATGTCTCCGGGTATGGTAACAACG-CTAGATTCC 260
Query 240 GATGTTGGCGTCGTGTCTTCTGCAACTACTAAAAAGGTGCTTGTTCCAATTGGATATGGT 299
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GATGTTGGCGTCGGGTCTTCTGCAACTACTAAAAAGGTGCTTGTTCCAATTGGATATGGG 320
Query 300 ACGGAGGAAATAGAAGCTGTTGTGTTAGTTGATGTTCTACGGCGAGCTGGGGCAGAGGTC 359
|||||||||||||||||||||||||||||||||||| ||||||||||||| || || ||
Sbjct 321 ACGGAGGAAATAGAAGCTGTTGTGTTAGTTGATGTTTTACGGCGAGCTGGTGCTGATGTT 380
Query 360 ACTGTTGCCTCTGTGGAGCAGAAGCTAGACATTGAAGCATCCTCAGGGACCAGATTAG-T 418
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||| | |
Sbjct 381 ACTGTTGCTTCTGTGGAGCAGAAGCTAGAGGTTGAAGGATCCTCAGGGACCAGATT-GCT 439
Query 419 TGCTGATGTTCTTATCTCGAAGTGTGCTGATCAGGTTTATGATCTAGTGGCTTTGCCGGG 478
||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||
Sbjct 440 TGCTGATGTTCTTATCTCGAAATGTGCTGATCAAGTTTATGATTTAGTTGCTTTGCCGGG 499
Query 479 AGGCATGCCTGGTGCTGTTAGGTTAAGAGACTGTAAAATTCTTGAGAAGATCATGAAGAG 538
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 500 AGGCATGCCTGGTGCTGTTAGGTTAAGAGACTGTGAAATTCTCGAGAAGATCATGAAGAG 559
Query 539 ACAAGCTGAAGATAAGCGGTTATACGGGGCTATATCCATGGCTCCAGCTATTACTCTTCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ACAAGCTGAAGATAAGCGGTTATACGGGGCTATATCCATGGCTCCAGCTATTACTCTTCT 619
Query 599 TCCATGGGGACTTTTGACAAGAAAGAGGACAACGGGACATCCTGCTTTTTTCGGGAAGCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TCCATGGGGACTTTTGACAAGAAAGAGGACAACGGGACATCCTGCTTTTTTCGGGAAGCT 679
Query 659 TCCTACATTCTGGGCTGTTAAGACAAACATTCAGGTTTCAGGGGAGCTTACAACTAGCCG 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 TCCTACATTCTGGGCTGTTAAGACAAACATTCAGATTTCAGGGGAGCTTACAACTAGCCG 739
Query 719 TGGACCCGGCACTTCTTTTCAGTTTGCTCTTTCCTTGGCGGAGCAGCTCTTTGGAGAAAC 778
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 740 TGGACCCGGCACTTCTTTCCAGTTTGCTCTTTCCTTGGCGGAGCAGCTCTTCGGAGAAAC 799
Query 779 CACAGCCAAGTCAGTTGAAGAGTTTCTGCTTCTGCGTGATGGTTACCAGAATCCTAAGAA 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CACAGCCAAGTCAATTGAAGAGTTTCTGCTTCTGCGTGATGGTTACCAGAATCCTAAGAA 859
Query 839 CAAAGAGTTCAATAGCATTGACTGGTCTTTAGACCACACACCTCGTGTTCTTATCTCGGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 860 CAAAGAGTTCAATAGCATTGACTGGTCTTTAGACCACACACCTCGTGTTCTTATCCCGGT 919
Query 899 AGCCAACGGGTCTGAAGAGGTTGAATTGGTCACAATTGCAGATGTTCTTAGAAGAGCCAA 958
||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 920 AGCCAACGGGTCTGAAGCGGTTGAACTGGTCTCAATTGCAGATGTTCTTAGAAGAGCCAA 979
Query 959 AGTAGATGTCACTGTTGCATCAGTTGAACGATCTTTGCGGATTACGGCATCCCAAGGCAC 1018
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 980 AGTAGATGTCACGGTTTCATCAGTTGAACGATCTTTGCGGATTACGGCATTCCAAGGCAC 1039
Query 1019 CAAAATTATCACCGACAAATTGATTGGTGAAGCTGCTGAGTCATCATATGATCTAATCGT 1078
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1040 CAAAATTATCACTGACAAATTGATTGGTGAAGCTGCTGAGTCATCATATGATCTAATCAT 1099
Query 1079 TCTTCCGGGAGGCCATACTGGCTCAGAACGTCTGCAGAAGTCCAAAATTCTGAAGAAACT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1100 TCTTCCGGGAGGCCATACTGGCTCAGAACGTCTGCAGAAGTCCAAAATTCTCAAGAAACT 1159
Query 1139 GCTCAGGGAACAACATAAATCTGGGAGAATATATGGAGCTGCCAACTCTTCATCTACCGT 1198
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1160 GCTCAGGGAACAACATGAATCTGGGCGAATATATGGAGCTACCAACTCTTCATCTACCGT 1219
Query 1199 CCTACATAAACATGGTTTACTCAAGGAGAAGAGAACGACTGTGTATCCTTCAGAGACAGA 1258
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1220 TTTGCATAAACATGGTTTACTCAAGGAGAAGAGAACGACTGTGTATCCTTCAGAGTCAGA 1279
Query 1259 CGGGCCTATGAATCAACAAATGATCGAAGGAGCAGAAGTTGTTATAGATGGAAACGTGAT 1318
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1280 CGAGCCTATGAATCAACAAATGATCGAAGGAGCCGAAGTTGTTATAGATGGAAACGTGAT 1339
Query 1319 TACAAGTTTGGGGCTCGCAACTGTTACCAAATTTTCCCTGGCTATTGTTAGCAAGCTGTT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 TACAAGTTTGGGGCTCGCAACTGTTACCAAATTTTCCCTGGCTATTGTTAGCAAGCTGTT 1399
Query 1379 TGGACATGCTAGAGCAAGGAGTGTTTCAGAAGGGCTTGTGCATGAGTATCCAAGGCATTA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1400 CGGACATGCTAGAGCAAGGAGTGTTTCAGAAGGGCTTGTGCATGAGTATCCAAGGCAGTA 1459
Query 1439 AACACCGTTTGAAAGCATCTT 1459
| | | |||||||||||||||
Sbjct 1460 A-C-C-GTTTGAAAGCATCTT 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5