BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944602
Length=2494
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33300.1 | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051051-16... 3579 0.0
> AT4G33300.1 | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051051-16056526
REVERSE LENGTH=2946
Length=2946
Score = 3579 bits (1938), Expect = 0.0
Identities = 2302/2477 (93%), Gaps = 27/2477 (1%)
Strand=Plus/Plus
Query 6 TTGACTTCGT--T-TCCAATGGCCGTCACCGATTTTTTCGCCGGTGAAATTGCGACGGAG 62
||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 367 TTGACTTGGTGGTATCCAATGGCCATCACCGATTTTTTCGCCGGTGAAATTGCGACGGAG 426
Query 63 CTCCTGAAGCAGCTGTTTTTGATATCTGCCAA-AGCATGGAAATACAAAAGCACAGCCGA 121
|||||||||||||| ||| ||||||| ||| || |||| |||||||| ||| ||| |
Sbjct 427 CTCCTGAAGCAGCTCTTTACGATATCT-ACAACGGCGTGGAGATACAAAAACACCGCC-A 484
Query 122 TAAC--CTCATCGCCTTGATTGAGGA-TATTCAACCGACGATCAAGGAGATTCAGTACAG 178
||| ||| || ||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct 485 -AACAACTCCTCACCTTGATCGA-TAGCATTCGACCGACGATCAAGGAGATTCAATACAG 542
Query 179 TGGCGTGGAGCTTCCTGCTCACCGCCAGGCTCAAATCGGTATGCTCTTTGATACCTTT-G 237
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |
Sbjct 543 CGGCGTGGAGCTTCCTGCTCACCGCCAAGCTCAAATCGGTATGCTCTTCGATA-CTTTAG 601
Query 238 AGAAAGGCAAGAAACTCACCGAGAAAGTCCTTAGCTC-CCGTCGCTGGAACATGT-TCCG 295
||||||||||||| ||||| || |||||||||||||| | || ||||| | | | ||
Sbjct 602 AGAAAGGCAAGAAGCTCACTGACAAAGTCCTTAGCTCTAAG-CGATGGAATTTATAT-CG 659
Query 296 TCAGCTAACCTTAGCGAGGAAAATGGAGAAGCTCGAGAAGACCATCACTAATTTCCTTAA 355
||||||||| |||| || |||||||||||||| |||||||||||| |||||||||||||
Sbjct 660 ACAGCTAACCCTAGCCAGAAAAATGGAGAAGCTAGAGAAGACCATCTCTAATTTCCTTAA 719
Query 356 AGCTCCGAT-TTTGGCCCATATCCTCGCTGACGTTCATCGTCTCCGGGCCGATTCCGA-A 413
| | | | ||| | |||||||||||||||||||||| ||||||||||||| || |
Sbjct 720 AAATGAGGTCTTT-ACACATATCCTCGCTGACGTTCATCATCTCCGGGCCGATACC-AGT 777
Query 414 GAGCGTTTGGATCGTGTTGACAGGAGCCTCGAGAGGGTGATTCAGCAAGTGGGTTCCATG 473
| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 778 GTGCGTTTGGATCGGGTTGACATGAGCCTCGACAGGGTGATTCAGCAAGTGGGTTCCATG 837
Query 474 AAAATCGGCGGAGGAGGGATGATTA-GAGAGGCCATGAAGAGAGCCGAGGCTATGGAGAT 532
||||| || ||||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 838 AAAATTGGGGGAGGTGGCTTGA-TATCAGAGGCCATGAAGAGAGCCGAGGCTATGGAGAT 896
Query 533 TGAGACCAACGACGATTTGGAGAAATTTGGTGTTGGATTGGAATTGGGAAAGATCAAGGT 592
||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||
Sbjct 897 TGAGACCAACGACGATTCGGAGAAATTTGGGGTTGGATTGGAATTGGGAAAGGTTAAGGT 956
Query 593 TAAGAAGATGATGTTCGAAGCTCAAGGAGGGGTTTTTGGTATCAGTGGAATGGGCGGTGT 652
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 TAAGAAGATGATGTTCGAATCTCAAGGAGGGGTTTTTGGGATCAGTGGAATGGGCGGTGT 1016
Query 653 TGGTAAAACCACTCTTGCCAGAGAGCTTGAACGGGACCATCAAGTCCGATGTCACTTCGA 712
|||||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||||| ||
Sbjct 1017 TGGTAAAACCACTCTTGCCAAAGAACTTCAACGGGACCATGAAGTCCAATGTCACTTTGA 1076
Query 713 GAACCGGATTTTGTTTCTGACTGTATCACAATCTCCGCTTCTTGAGGAGCTGAGGGAACA 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAACCGGATTTTGTTTCTGACTGTATCACAATCTCCGCTTCTTGAGGAGCTGAGGGAACT 1136
Query 773 TATATGGGGTTTCTTATCTGGTTGTGAAGCTGGAAATCCTGTTCCAGACTGCAGTTTTCA 832
||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 1137 TATATGGGGTTTCTTATCTGGTTGTGAAGCTGGAAATCCTGTTCCTGACTGTAATTTTCC 1196
Query 833 GTTTGAGGGCACCCGGAAGCTCGTGATTCTTGATGATGTTTGGACCACACAGGCCCTGGA 892
|||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTTTGATGGCGCGCGTAAGCTCGTGATTCTTGATGATGTTTGGACCACACAGGCCCTGGA 1256
Query 893 CCGCTTGACGTCCTTTAAGTTTCCTGGTTGCACAACTCTTGTGGTCTCACGATCCAAACT 952
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCGCTTGACCTCGTTTAAGTTTCCTGGTTGCACAACTCTTGTGGTCTCACGATCCAAACT 1316
Query 953 CACAGAGCCTAAATTCACTCATGATGTCGAAGTACTAAGTGAAGACGAAGCAATCTCTCT 1012
||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 1317 CACTGAGCCTAAATTCACTTATGATGTCGAAGTACTGAGTGAAGATGAAGCAATCTCTCT 1376
Query 1013 CTTCTGTCTCTGTGCATTCGGTCAGAAATCTGTCCCTCCTGGTTTCTGCAATGATCTGGT 1072
||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 1377 CTTCTGTCTCTGTGCTTTCGGTCAGAAATCTATCCCTCTTGGTTTCTGCAAAGATCTGGT 1436
Query 1073 TAAGCAGGTTGCTAATGAATGCAAAGGTCTACCTTTAGCTCTCAAAGTTACAGGTGCTTC 1132
||||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 1437 TAAGCAGGTTGCTAATGAATGTAAAGGGCTTCCTTTAGCTCTCAAAGTCACGGGTGCTTC 1496
Query 1133 ATTAAATGACAAACCTGAAAAATACTGGGAGGGCGTATTGCAGAGGTTATCAAGAGGTGA 1192
|||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 1497 ATTAAATGGCAAACCTGAAATGTACTGGAAGGGCGTATTGCAGAGGTTATCAAAAGGTGA 1556
Query 1193 ACCTGCTGATGACTCTCACGAGAGTAGATTGCTTAATCAAATGGAAGCTAGTCTAGAAAA 1252
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1557 ACCTGCTGATGACTCTCACGAGAGTAGATTGCTTCGTCAAATGGAAGCTAGTCTAGACAA 1616
Query 1253 TCTCGACCAAACAACCAAAGATTGTTTCTTGGATCTTGGTGCATTCCCTGAAGACAGGAA 1312
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1617 TCTCGACCAGACGACCAAAGATTGTTTCTTGGATCTTGGCGCCTTCCCTGAAGACAGGAA 1676
Query 1313 GATTCCTCTTGATGTTCTCATCAACATGTGGATTGAGTTACATGATATAGATGAAGGAAA 1372
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1677 GATTCCTCTTGATGTTCTCATCAACATTTGGATTGAGTTACATGATATAGATGAAGGAAA 1736
Query 1373 TGCTTTTGCCATCCTCGTTGATTTGTCACACAAGAATCTCCTTACTCTTGGGAAGGATCC 1432
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TGCTTTTGCCATCCTTGTTGATTTGTCACACAAGAATCTCCTTACTCTTGGGAAGGATCC 1796
Query 1433 ACGGCTTGGCTCTTTGTACGCAAGCCACTATGATATATTTGTGACACAGCATGACGTTCT 1492
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1797 ACGGCTTGGCTCTTTGTACGCAAGCCACTATGATATATTTGTGACACAGCATGATGTTCT 1856
Query 1493 GCGAGACTTAGCACTTCATATAAGCAACGTAGGGAAAGTAAACAGAAGAAAGCGGTTGCT 1552
||||||| |||| |||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 1857 GCGAGACCTAGCTCTTCATTTAAGCAATGCAGGGAAAGTAAACAGAAGAAAGCGGTTGCT 1916
Query 1553 GATGCCGAAAAGAGAGTTAGAGCTTCCAAGAGAATGGGAAAGGAACAATGATGAGCATTA 1612
||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 1917 GATGCCGAAAAGAGAGTTAGATCTTCCAGGAGATTGGGAAAGGAACAATGATGAGCATTA 1976
Query 1613 CATCGCCCAGATTGTCTCTATTCATACTGGGGAAATGAATGAAATGCAATGGTTTGACAT 1672
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 CATTGCCCAGATTGTCTCTATTCATACTGGGGAAATGAATGAAATGCAATGGTTTGACAT 2036
Query 1673 GGAGTTCCCCAAGGCAGAGATTCTAATACTGAATTTCTCTTCAGACAAGTATGTTCTTCC 1732
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2037 GGAGTTCCCCAAGGCAGAGATTCTAATATTGAACTTCTCTTCAGACAAGTATGTTCTTCC 2096
Query 1733 GCCTTTTATCACTAAGATGAGCCGGCTTAGGGTCCTAGTGATTATCAACAACGGCATGTC 1792
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2097 GCCTTTTATCAGTAAGATGAGCCGGCTTAAGGTCCTAGTGATTATCAACAACGGCATGTC 2156
Query 1793 -CCCTGCGGTTCTCCACGACTTTTCAATATTTGC-CAATTTGTCGAAATTAAGGAGTCTC 1850
||| ||||||||||| ||||||||||||||||| | ||||||||||| |||| ||||||
Sbjct 2157 TCCC-GCGGTTCTCCATGACTTTTCAATATTTGCTC-ATTTGTCGAAACTAAGAAGTCTC 2214
Query 1851 TGGCTCGAGAGGGTTCACGTCCCTGAACTCTCCAACTCAACCACCCCCTTGAAAAATCTC 1910
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2215 TGGCTAGAGAGGGTTCACGTCCCTCAACTCTCCAACTCAACCACCCCCTTGAAAAATCTC 2274
Query 1911 CACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGAGTTGAC 1970
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2275 CACAAGATGTCTTTGATTCTGTGCAAGATCAATAAAAGTTTTGATCAAACCGGACTTGAC 2334
Query 1971 GTGGCCGATATCTTCCCAAAATTGGGGGATCTGACGATAGATCACTGTGATGATCTCGTG 2030
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2335 GTGGCAGATATCTTCCCAAAATTGGGCGATCTGACAATAGATCACTGTGATGATCTCGTG 2394
Query 2031 GCACTACCTTCAAGCATTTGCGGATTGACCTCTCTTAGCTGCTTAAGCATAACAAATTGT 2090
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2395 GCACTACCTTCAAGCATTTGCGGACTGACCTCCCTTAGCTGCTTAAGCATAACAAATTGT 2454
Query 2091 CCACGCCTCGGTGAATTGCCCAAGAACCTCAGTAAGCTACAAGCTCTCGAAATCTTAAGG 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 CCACGCCTCGGTGAATTGCCCAAGAACCTCAGTAAGCTACAAGCTCTCGAAATCTTAAGG 2514
Query 2151 CTATATGCTTGCCCTGAGCTAAAGACATTACCTGGAGAAATCTGTGAGCTTCTTCGGCTT 2210
||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 2515 CTATATGCTTGCCCTGAGCTAAAGACATTACCTGGAGAAATATGTGAGCTTCCTGGGCTT 2574
Query 2211 AAGTACCTCGATATCTCACAATGCGTTAGCCTGAGTTGTCTTCCAGAGGAAATAGGAAAG 2270
||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2575 AAGTATCTCGACATCTCACAATGTGTCAGCCTGAGTTGTCTTCCAGAGGAAATAGGAAAG 2634
Query 2271 CTAAAGAAGCTTGAGAAGATCGACATGAGAGAATGTTGTTTTTCGGGTAGACCGAGCTCT 2330
|||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct 2635 CTAAAGAAGCTTGAGAAGATCGACATGAGAGAATGTTGCTTCTCGGATAGACCGAGCTCT 2694
Query 2331 GCTGTTTCACTGAAATCTCTGCGCCATGTAATATGTGATACAGACGTTGCATTTATGTGG 2390
|||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 2695 GCTGTTTCACTGAAGTCTCTGCGCCATGTAATCTGCGATACCGACGTTGCATTTATGTGG 2754
Query 2391 GAAGAAGTTGAGAAGGCTGTTCCAGGATTAAAGATAGAAGCTGCTGAGAAATGCTTCAGC 2450
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2755 GAAGAAGTTGAGAAGGCTGTTCCAGGGTTAAAGATCGAAGCTGCTGAGAAATGCTTCAGC 2814
Query 2451 CTAGATTGGCTTGACGA 2467
||||| |||||||||||
Sbjct 2815 CTAGACTGGCTTGACGA 2831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123761848381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5