BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944670 Length=730 Score E Sequences producing significant alignments: (Bits) Value AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamil... 907 0.0 > AT4G32800.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:15819524-15820871 FORWARD LENGTH=1348 Length=1348 Score = 907 bits (491), Expect = 0.0 Identities = 653/725 (90%), Gaps = 36/725 (5%) Strand=Plus/Plus Query 1 GCT-TAAACCTTTCTGATTAACAATGGCAAATTCGTCTTCCGACAAGGAGAAGAAGGAAA 59 ||| |||| |||||||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 267 GCTCTAAA-CTTTCTGACTACCAATGGCGGATTCGTCTTCCGACAAGGAGAAGAAGGAAA 325 Query 60 ATAGTAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 119 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 326 ATAATAAGCAGCCCGTGTATCGTGGAGTCCGTATGAGGAGCTGGGGAAAATGGGTATCGG 385 Query 120 AGATTCGTGAACC-ACGGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 178 ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 AGATTCGCGAACCGA-GGAAGAAATCGAGAATCTGGCTCGGGACTTTTCCGACGGCGGAG 444 Query 179 ATGGCGATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAAGTTCAGCCATTCTC 238 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 445 ATGGCTATGCGTGCTCACGACGTGGCGGCTATGAGTATCAAAGGAACTTCAGCCATTCTC 504 Query 239 AATTTCCCTGAGCTCTCCGATTTT-TTGCCCCGACCCGTTTCGCTCAGCCCTCGCGACGT 297 ||||||||||||||||| | || || |||||||||||||||||||||||||| ||||| Sbjct 505 AATTTCCCTGAGCTCTCTAAACTTCTT-CCCCGACCCGTTTCGCTCAGCCCTCGTGACGT 563 Query 298 CAGAGCTGCGGCGACCAAAGCCGCTCTCATGGACTTCGATACGCCGCCGTGTCGTTCAGA 357 ||||||||||||||||||||| ||||||||||||||||||||| || ||| |||||| || Sbjct 564 CAGAGCTGCGGCGACCAAAGCTGCTCTCATGGACTTCGATACGACGGCGTTTCGTTCGGA 623 Query 358 GACTGAGACGAGCGAAACGAACAAAAGGTCAGAGACTAGCGAAACGAC-GACGTCGGATA 416 |||||||| |||||||||| | | | || || | || ||| | | || | | || Sbjct 624 TACTGAGACTAGCGAAACGA-CGAC-G-TC-GA-A-TA---AAATGTCAGA-GA-G--TA 670 Query 417 AAAGGTCAGAGAGTAGCGAAACGGTGTCGTTCTCATCGTCGTCTTCGTTCTCTGTTACGA 476 | | ||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct 671 ---G-T--GAGAGTAACGAAACGGTGTCGTTCTCATCGTCGTCTTGGTCCTCTGTTACGA 724 Query 477 GCATTGAGGAAAGTACAGTCTCCGACGATGATCTAGACGCGATCGTTAAGTTACCGAGTC 536 ||||||||||||||||||||||||||||| | | |||| |||||| ||||||||||||| Sbjct 725 GCATTGAGGAAAGTACAGTCTCCGACGATC-T-T-GACGAGATCGTAAAGTTACCGAGTC 781 Query 537 TAGGAACGAGTGTAGACGAGTCGAACGAGTTCGTGATTTTTGACTCGTTGGAGGATTTGG 596 |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 782 TAGGAACGAGCCTAAACGAGTCGAACGAGTTCGTGATATTTGACTCGTTGGAGGATTTGG 841 Query 597 TGTACATGCCTCCGTGGTTAAGCGGTACGGAAGAAGAAGAAGTTTTTACGTATAA---CA 653 |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || Sbjct 842 TGTACATGCCTCGGTGGTTAAGCGGTACGGAAGAAGAAG---TTTTTACGTATAATAACA 898 Query 654 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ATGATTCTTCGTTGAATTACTCATCAGTTTTCGAATCTTGGAAACATTTTCCCTGAGAAA 958 Query 714 AAGAA 718 | ||| Sbjct 959 A-GAA 962 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35415073635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5