BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944698

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32590.3 | Symbols:  | 2Fe-2S ferredoxin-like superfamily pr...   767    0.0  


> AT4G32590.3 | Symbols:  | 2Fe-2S ferredoxin-like superfamily 
protein | chr4:15721324-15722869 FORWARD LENGTH=724
Length=724

 Score =  767 bits (415),  Expect = 0.0
 Identities = 472/499 (95%), Gaps = 6/499 (1%)
 Strand=Plus/Plus

Query  16   GGAAGAAATGGCTTCGTTAGGTTTCAACCTCGGCTTCACCTTCTCCAATGCACGAATTCA  75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  87   GGAAGAAATGGCTTCGTTAGGTTTCAACCTCGGCTTCACCTTCTCCAATGCACAAATTCA  146

Query  76   GCAGCATCGAAAAGTTTCCGGAAGTGGAAGGGTTCGCGTTATCTCCTGTAACAGCtcttc  135
            |||||||||||||||||||||| ||||||| | |||||| ||||||||||||||     |
Sbjct  147  GCAGCATCGAAAAGTTTCCGGAGGTGGAAGAGCTCGCGTAATCTCCTGTAACAG-----C  201

Query  136  ttcttcttcttcttcttctCAAGCATCATCTCCGCAGGGGATTTCTGCAGCGACGCCTCC  195
             |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| 
Sbjct  202  -TCTTCTTCTTCTTCTTCTCAAGCATCATCTCCTCAGGGGATTTCTGCAGTGACGCCTCT  260

Query  196  TGAGATAGAGCTCGAGTTCTTCGGTCCGAAGCCGGGGAGCGACGGGTCGTATCCGGTGGA  255
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct  261  TGAGATAGAGCTCGAGTTCTTCGGTCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGA  320

Query  256  TAAAGCCAAGGCTGTGAGCGGAGAGAAGCTTCTGAGAAGCATTATGCAGGATAACAAAAT  315
            |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct  321  TAAAGCAAAGGCTGTGAGTGGAGATAAGCTTCTCAGAAGCATTATGCAGGATAACAAAAT  380

Query  316  CGAACTCTACGCTGCTTACGGGAAACTGATGAACTGTGGAGGTGGAGGAAGCTGTGGAAC  375
             |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct  381  TGAACTCTACGCTGCTTACGGGAAAGTGATGAACTGTGGTGGTGGAGGAAGCTGTGGAAC  440

Query  376  TTGCATTGTGGAGATACTAGACGGCAGAGATCTTCTGAACGAGAGAACAGATACAGAAAA  435
            |||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct  441  TTGCATTGTGGAGATACTCGATGGCAGAGATCTTCTGAATGAGAGAACAGATACAGAAAA  500

Query  436  CCGGTACCTGAAAAAGAAGCCGGAATCTTGGAGACTCGCATGTCAAACAATAGTAGGGAA  495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  CCGGTACCTGAAAAAGAAGCCGGAATCTTGGAGACTCGCATGTCAAACAATAGTAGGGAA  560

Query  496  CAAAGAAAACTCAGGAAAG  514
            |||||||||||||||||||
Sbjct  561  CAAAGAAAACTCAGGAAAG  579


 Score = 75.0 bits (40),  Expect = 7e-13
 Identities = 40/40 (100%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  513  AGGTTGTCGTGCAGCGGATTCCACAGTGGAAGAAGTGAAT  552
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  594  AGGTTGTCGTGCAGCGGATTCCACAGTGGAAGAAGTGAAT  633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5