BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944713
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32480.1 | Symbols: | Protein of unknown function (DUF506) ... 1448 0.0
AT2G20670.1 | Symbols: | Protein of unknown function (DUF506) ... 508 3e-143
> AT4G32480.1 | Symbols: | Protein of unknown function (DUF506)
| chr4:15676404-15677973 FORWARD LENGTH=1145
Length=1145
Score = 1448 bits (784), Expect = 0.0
Identities = 864/904 (96%), Gaps = 0/904 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCCTCCTTCAAGAAATGGATCGGCAAAATTCCGATGACATCATGAAATTTCTCG 60
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 65 TCTCTCGCCTGCTTCAAGAAATGGATCGGCAAAGTTCCGATGACATCATGAAATTTCTCG 124
Query 61 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGTTTTCTCGACGGAGGAAATCACTCAC 120
|||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||
Sbjct 125 ACGGCATGGCTAGCTCCGACGATGTTCTTTTTGGCTTCCTCGACGAAGGAAACCACTCAC 184
Query 121 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGAGACCACCGATT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 185 CGGAGGATTATAACTTCGCCGCCGGCGACGAATCCGAAGTTGACAACGATACCACCGATT 244
Query 181 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACAAGAACAACTTCTCCAGGCGACAC 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 245 GTAATTCAGAAGAGAACAGAAAATTTTGGCAAGAACACGAACAACTTCTCCAGGCGACAC 304
Query 241 TATATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACCAAGGAAGCGTTGAAAG 300
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 305 TGTATAGGACAAGTTCAATTGAGACAAAGATAAGACAAGCAACTAAGGAAGCGTTGAAAG 364
Query 301 TAGTTAGATCAAAGGGTTTGGTATGTGTTTGCCGGAGACCGGTTACCGACGGTTGTCGTA 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 365 TAGTTAGATCAAAGGGTTTGGTATGTGTCTGCCGGAGACCGGTTACCGACGGTTGTCGTA 424
Query 361 GCTGTTTACGCGGCGAAGTGTCTCGCCGCCTCCGAGAAGCTGGCTATGATTGCGCCATTT 420
||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||
Sbjct 425 GCTGTTTACGCGGCGAAGTATCTAGCCTCCTCCGAGAAGCTGGCTATGATTGCGTCATTT 484
Query 421 CCAAATCCAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATATTTGGAGG 480
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 485 CCAAATCTAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATACTTGGAGG 544
Query 481 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TCGTGGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTA 604
Query 541 GGGCGGAGTTTGAGATGGCGAGAGGTAGTGACGAGTACAAGCGACTCATCGGAATGTTAC 600
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 605 GGGCGGAGTTTGAGATGGCGAGAGGCAGTGAAGAGTACAAGCGACTCATCGGAATGTTAC 664
Query 601 CGGAAGTGTACGTCGGGAAAACGGAGAGGCTAAAATCATTGATAAAAATATTGTGCACCG 660
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 665 CGGAAGTGTATGTCGGGAAAACGGAGAGGCTAAAATCATTAATAAAGATATTGTGCACCG 724
Query 661 CGGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAGT 720
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 CAGCGAAGAAGTGTATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAAT 784
Query 721 ACATGCAGGCGAAATGGCTTGGAACGTGTGAGAGAAAATCGGTGTCGCCGGTGTCCGAAA 780
|||||||||| |||||| ||||||| |||||||||||||| |||||||| || |||||||
Sbjct 785 ACATGCAGGCTAAATGGTTTGGAACTTGTGAGAGAAAATCTGTGTCGCCAGTATCCGAAA 844
Query 781 CTGAAGAGGATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATAATGGTCTTT 840
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 845 CTGAGGAGAATATGTTTCCGGTGGCAAAGCAGAGGGTTTCTATGTTGAATTATGGTCTTT 904
Query 841 TTGGTGCTGGAATGGGCCGTCCAACCGCCGTAGCGGTTGTGTGAGACATATATATAGACG 900
||||||||||||| |||||||| |||| ||||||||||||||| |||| ||||||||||
Sbjct 905 TTGGTGCTGGAATAGGCCGTCCGACCGTTGTAGCGGTTGTGTGAAACATCTATATAGACG 964
Query 901 TACG 904
||||
Sbjct 965 TACG 968
> AT2G20670.1 | Symbols: | Protein of unknown function (DUF506)
| chr2:8911860-8913534 REVERSE LENGTH=1250
Length=1250
Score = 508 bits (275), Expect = 3e-143
Identities = 598/751 (80%), Gaps = 34/751 (5%)
Strand=Plus/Plus
Query 21 ATGGATCGGCAAAATTCCGATGACATCATGAAATTTCTCGACGGCATGGCTAGCTCCGAC 80
||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 63 ATGGATCGGCAAAATTCCGATGACATCATGAGATTTCTCGATGGAATGGCTAGCTCCGAC 122
Query 81 GATGTTCTTTTTGGTTTTCTCGACGGAGGAAATCACTCACCGGAGGATTA-T----AA-C 134
|| |||||||| |||||||| |||| |||||| || |||||||| |||| | || |
Sbjct 123 GACGTTCTTTTCGGTTTTCTTGACGAAGGAAACCAGTCACCGGAAGATTTCTCCGTAAAC 182
Query 135 TTCGCCGCCGGCGACGAATCCGAAGTTGAC-AACGA-GACCACCGATTGTAATTCAGAAG 192
|| ||||||||| || | || | |||| || || ||| | || ||||| ||||
Sbjct 183 CTCAACGCCGGCGAAGA-T--GACGGTGACGAA-GACGACAATA-ATAACAATTCTGAAG 237
Query 193 AGAACAGAAAATTTT-GGCAAGAACAAGAACAACTTCTCCAGGCGACACTATATAGGACA 251
| |||| || |||| |||| ||||| ||||||||||| |||| |||||| |||||||||
Sbjct 238 ATAACA-AAGCTTTTTGGCAGGAACACGAACAACTTCTTCAGGGGACACTGTATAGGACA 296
Query 252 AGTTCAATTGAGACAAAGATAAGACAAGCAACCAAGGAAGCGTTGAAAGTAGTTAGATCA 311
||||| |||||||||||||| |||||||| || || |||||||||||| ||||| |||
Sbjct 297 AGTTCCATTGAGACAAAGATTAGACAAGCTACAAAAGAAGCGTTGAAACAAGTTAAATCT 356
Query 312 AAGGGT-TTGGTAT-GTGTTTGCCGGAGACCGGTT-ACCGACGGTTGTCGTAGCTGTTTA 368
|||||| || ||| ||||||||||| |||| || || | |||||| || || || |||
Sbjct 357 AAGGGTCTT--TATTGTGTTTGCCGGCGACCAGTGGACGG-CGGTTGCCGGAGTTGCTTA 413
Query 369 CGCGGCGAAGTGTCTCGCCGCCTCCGAGAAG-CT--GGCTATGATTGCGCCATTTCCAAA 425
|| |||||| | ||| | | ||| |||| | | ||||| ||||||| ||| || |||
Sbjct 414 CGTGGCGAAATCTCTAGACACCTAAGAGATGTCGCCGGCTACGATTGCGTCATCTCTAAA 473
Query 426 TCCAAGTGGAGAAGCTCTCATGAGATCCCTGCAGGTGAGCATGAATATT-TGGAGGTCGT 484
|| || |||||||| | ||| || ||||||||||| || || |||| || | ||| | ||
Sbjct 474 TCTAAATGGAGAAGTTGTCAAGACATCCCTGCAGGGGAACACGAAT-TTATAGAGATTGT 532
Query 485 GGACAAATCGGTTTCAAAGAAAGGCGAGATCCGGGTGGTGATCGAACTATGTTTTAGGGC 544
|||| ||||| |||||||||| ||||||| || |||||||| || ||| ||||||||
Sbjct 533 GGACCGATCGGGTTCAAAGAAAAGCGAGATGCGAGTGGTGATTGAGTTATCATTTAGGGC 592
Query 545 GGAGTTTGAGATGGCGAGAGGTAGTGACGAGTACAAGCGACTCATCGGAATG-TTACCGG 603
||||||||||| || | ||| ||||| |||||||| |||| ||| | | || || |
Sbjct 593 AGAGTTTGAGATTGCAAAAGGCAGTGAAGAGTACAAAAGACTTATCAGTC-GATTGCCTG 651
Query 604 AAGTGTACGTCGGGAAAACGGAGAGGCTAAAATCAT-TGATAAAAATATTGTGCACCGCG 662
| || |||||||||||||| |||||||| ||| | ||||||| |||||||||| |||
Sbjct 652 AGGTTTACGTCGGGAAAACCGAGAGGCTTCGATC-TCTGATAAAGATATTGTGCATAGCG 710
Query 663 GCGAA-GAAGTG-TATGAAAGACAAGAAGATGCACATGGGTCCTTGGAGAAAACACAAGT 720
| ||| ||| || | ||| ||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 711 G-GAAAGAAATGCT-TGAGAGACAAGAAAATGCATATGGCTCCTTGGAGAAAACACAAGT 768
Query 721 ACATGCAGGCGAAATGGCTTGGAACGTGTGA 751
||||||| || || |||||||| || |||||
Sbjct 769 ACATGCAAGCCAAGTGGCTTGGCACATGTGA 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5