BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944714

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G32470.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kD...   686    0.0  


> AT4G32470.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa 
subunit | chr4:15669219-15671194 REVERSE LENGTH=890
Length=890

 Score =  686 bits (371),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 2/414 (0%)
 Strand=Plus/Plus

Query  1    CTGAAATTGAGAGAGACAAAGAAAAATGGCGTCTCTTCTGAAATCGTTCATCGATCCAAA  60
            |||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||
Sbjct  75   CTGAAATTGAGAGAGACAGAGAAAAATGGCGTCGCTTCTGAAAGCATTCATCGATCCAAA  134

Query  61   GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATCTCTACTCGCCTTCGCAGATACGG  120
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  135  GAAGAACTTCCTCGCTCGTATGCATATGAAAGCCATATCTACTCGCCTTCGCAGATACGG  194

Query  121  TCTGAGGTACGATGATCTGTACGATCAGTATTATAGTATGGACATCAAAGAGGCTATGAA  180
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  195  TCTGAGGTACGATGATCTGTACGATCAGTATTACAGTATGGACATCAAAGAGGCTATGAA  254

Query  181  CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  CAGATTGCCCAGGGAGGTCGTTGATGCTCGTAACCAGCGTCTCAAGCGTGCCATGGACCT  314

Query  241  CTCCATGAAGCACGAGTATCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG  300
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  315  CTCCATGAAGCACGAGTACCTCCCCAAGGATCTTCAGGCGGTGCAGACCCCATTCCGTGG  374

Query  301  CTATCTTCAGGATATGCTGGCTCTTGTTGAGAGGGAAAGCAAAGAACGAGAGGCCTTGGG  360
            |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  375  CTATCTTCAGGACATGCTTGCTCTTGTTGAGAGGGAAAGCAAGGAACGAGAGGCCTTGGG  434

Query  361  AGCTCTACCACTATACCAGCGCACACTCCCATAAGAATTCATATTCCCCCTTTT  414
            ||||||||||||||||||||||||||||||||||| |||| | |||||| ||||
Sbjct  435  AGCTCTACCACTATACCAGCGCACACTCCCATAAGCATTCCT-TTCCCC-TTTT  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5