BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944750
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32150.1 | Symbols: VAMP711, ATVAMP711 | vesicle-associated ... 1404 0.0
AT2G25340.1 | Symbols: ATVAMP712, VAMP712 | vesicle-associated ... 627 7e-179
> AT4G32150.1 | Symbols: VAMP711, ATVAMP711 | vesicle-associated
membrane protein 711 | chr4:15526113-15527879 REVERSE LENGTH=1182
Length=1182
Score = 1404 bits (760), Expect = 0.0
Identities = 853/896 (95%), Gaps = 14/896 (2%)
Strand=Plus/Plus
Query 1 GGCAAGGGGA-CGACGACGGAGATGGCGATTCTGTACGCACTCGTGGCTCGTGGCACGGT 59
|||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 207 GGCAGGGGGATCGACGACGGAGATGGCGATTCTGTACGCCCTCGTGGCTCGTGGCACGGT 266
Query 60 TGTTCTTTCTGAGTTCACCGCCACGTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 119
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 267 GGTTCTTTCTGAGTTCACCGCCACCTCTACGAATGCGAGCACCATCGCCAAACAGATCCT 326
Query 120 CGAGAAGGTCCCTGGAAACAACGACAGCAACGTTTCCTACTCTCAGGATCGTTACGTCTT 179
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 327 CGAGAAGGTCCCTGGAGACAACGACAGCAACGTCTCCTACTCTCAGGATCGTTACGTCTT 386
Query 180 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCCGAAGAAACCGCCGGAAG 446
Query 240 GAGAATTCCTTTTGCCTTTCTGGAGGATATTCACCAGAGATTCGTACGGACGTATGGCAG 299
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 447 GAGAATTCCTTTTGCCTTTTTGGAGGATATTCACCAGAGATTCGTACGGACTTATGGCAG 506
Query 300 GGCTGTTCATACAGCACAAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GGCTGTTCATACAGCACTAGCTTATGCAATGAATGAGGAATTCTCTAGAGTTCTCAGTCA 566
Query 360 GCAGATTGAGTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGGATTAAGGGTGA 419
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 567 GCAGATTGACTATTACTCTAATGATCCTAATGCCGATAGGATTAATCGTATTAAGGGTGA 626
Query 420 AATGAATCAGGTGCGGGGTGTCATGATAGAGAATATTGACAAAGTTCTAGATAGAGGTGA 479
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 627 AATGAATCAGGTGCGGGGTGTCATGATAGAAAACATTGACAAAGTCCTAGATAGAGGTGA 686
Query 480 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGAAATACATTCCGTTTCAG 539
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 687 ACGTTTGGAGCTTCTTGTCGATAAAACCGCCAATATGCAGGGGAATACATTCCGGTTCAG 746
Query 540 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAATTGCAAGCTCACGGTCCT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 747 AAAGCAAGCTCGTCGTTTTAGAAGCAACGTCTGGTGGAGAAACTGCAAGCTCACGGTCCT 806
Query 600 CTTAATACTACTACTACTGGTGATCATATACATAGCAGTGGCCTTTCTCTGCCACGGACC 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 807 CTTAATACTACTACTACTGGTGATCATATACATTGCAGTGGCCTTTCTCTGCCACGGACC 866
Query 660 TACTCTACCATCTTGCATTTAAGTGCATCAGTCTCTTAAGGAATCCATCCCGATTCTGCG 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 867 TACTCTACCATCTTGCATTTAAGTGCATCTGTCTCTTAAGGAATCCATCCCGATTCTGCG 926
Query 720 TGTTGCCACAACTTCTTT-TCTCCTCACCTGATTGTAAACGTTCTGTTT-CTTCGAGC-T 776
|||||||| |||| ||| |||||||| |||||||||||| || ||||| | | |||| |
Sbjct 927 CGTTGCCACGACTT-TTTATCTCCTCATCTGATTGTAAACCTTGTGTTTTCCT-GAGCAT 984
Query 777 TTT--T-T-----AAAAAGCTTATGTTTTCAACTCACGTATATGAAGAAGTATACTTATT 828
||| | | ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 985 TTTCATGTGGCTTAAAAAGCTTATGTTTCCAACTCACGTATATGAAAAAGTATACTTATT 1044
Query 829 TATAGAGCAATGTAAAAGCTCATTGCTTTGCAAAGTGTGTGAATCTTTGTTGTCAT 884
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1045 TATAGAGCAATGTAAAAGCTCATTGCTTTGCGAAGTGTGTGAATCTTTGTTGACAT 1100
> AT2G25340.1 | Symbols: ATVAMP712, VAMP712 | vesicle-associated
membrane protein 712 | chr2:10792664-10793832 REVERSE LENGTH=660
Length=660
Score = 627 bits (339), Expect = 7e-179
Identities = 548/648 (85%), Gaps = 18/648 (3%)
Strand=Plus/Plus
Query 43 GTGGCTCGTGGCACGGTTGTTCTTTCTGAGTTCACCGCCACGTCTACGAATGCGAGCACC 102
||||| ||||| ||||| |||||| | ||||| | | | ||||| ||||| || |||||
Sbjct 22 GTGGCGCGTGGAACGGTGGTTCTTGCGGAGTTAAGCACTACGTCCACGAACGCTAGCACG 81
Query 103 ATCGCCAAACAGATCCTCGAGAAGGTCCCTGGAAACAACGACAGCAACGTTTCCTACTCT 162
||||| || |||||||| |||||| ||||||| ||| ||||||| |||| || ||||||
Sbjct 82 ATCGCGAAGCAGATCCTTGAGAAGATCCCTGGTAACGGCGACAGCCACGTGTCATACTCT 141
Query 163 CAGGATCGTTACGTCTTCCACGTTAAACGCACCGATGGCCTCACCGTTCTCTGTATGGCC 222
||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 142 CAGGATCGTTACGTCTTCCACGTAAAACGTACTGATGGCCTCACCGTTCTTTGTATGGCT 201
Query 223 GAAGAA-ACCGCCGGAAGGAGAATTCC-TTTTGCCTTTCTGGAGGATATTCACCAGAGAT 280
|| ||| | |||||||||||| ||||| |||| | ||||| ||||||||||| ||||| |
Sbjct 202 GATGAAGA-CGCCGGAAGGAGGATTCCATTTT-CGTTTCTAGAGGATATTCATCAGAGGT 259
Query 281 TCGTACGGACGTATGGCAGGGCTGTTCATACAGCACAAGCTTATGCAATGAATGAGGAAT 340
| || ||||| |||||| | || ||||| | |||||||||||||| |||||||| || |
Sbjct 260 TTGTTCGGACTTATGGCCGCGCAATTCATTCGGCACAAGCTTATGCTATGAATGATGAGT 319
Query 341 TCTCTAGAGTTCTCAGTCAGCAGATTGAGTATTACTCTAATGATCCTAATGCCGATAGGA 400
|||| |||||||| | || || |||||||||||||||||||||||||||||||||| ||
Sbjct 320 TCTCAAGAGTTCTTAACCAACAAATTGAGTATTACTCTAATGATCCTAATGCCGATACGA 379
Query 401 TTAA-TCGGATTAAGGGTGAAATGAATCAGGTGCGGGGTGTCATGATAGAGAATATTGAC 459
| || ||| |||||||||||||||||||||||| ||| ||| ||||||||||| ||||||
Sbjct 380 T-AAGTCGAATTAAGGGTGAAATGAATCAGGTGAGGGATGTTATGATAGAGAACATTGAC 438
Query 460 AA-AGTTCTAGATAGAGGTGAACGT-TTGGAGCTTCTTGTCGATAAAACCGCCAATATGC 517
|| | |||| ||||||||||||||| ||| |||||||||||||||||||||| || ||||
Sbjct 439 AACA-TTCTTGATAGAGGTGAACGTCTTG-AGCTTCTTGTCGATAAAACCGCGAACATGC 496
Query 518 A-GGGAAATACATTCCGTTTCAGAAAGCAAGCTCGTCGTTTTAG-AAGCAACG-TCTGGT 574
| ||||| ||| ||||| |||||||||||| | |||||||| | || || || | ||||
Sbjct 497 AAGGGAA-TACCTTCCGATTCAGAAAGCAAACACGTCGTTTCAACAA-CA-CGGTGTGGT 553
Query 575 GGAGAAATTGCAAGCTCACGGTCCTCTTAATACTACTACTACTGGTGATCATATACATAG 634
|||||||||||||||||||| | |||||||||||| | | |||||||||||||||| |
Sbjct 554 GGAGAAATTGCAAGCTCACGCTACTCTTAATACTAGTGTTGTTGGTGATCATATACATCG 613
Query 635 CAGTGGCCTTT-CTCTGCCACGGACCTACTCTACCATCTTGCATTTAA 681
||||||||| || ||||| ||||| |||||||| |||||| |||||
Sbjct 614 GTGTGGCCTTTGCT-TGCCATGGACCAACTCTACCCTCTTGCGTTTAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5