BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944801 Length=1644 Score E Sequences producing significant alignments: (Bits) Value AT4G31780.2 | Symbols: MGD1, MGDA | monogalactosyl diacylglycer... 2715 0.0 > AT4G31780.2 | Symbols: MGD1, MGDA | monogalactosyl diacylglycerol synthase 1 | chr4:15373999-15377134 FORWARD LENGTH=1998 Length=1998 Score = 2715 bits (1470), Expect = 0.0 Identities = 1589/1647 (96%), Gaps = 6/1647 (0%) Strand=Plus/Plus Query 3 tctctctctctATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCGGCACCG 62 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 206 TCTCTCTCTCTATCAAATATGCAAAACCCTTCAACGGTAACCCAGGAATCAGCCGCACCG 265 Query 63 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTTGCCTCTCGAAATCGATCTCCGTGTTCG 122 |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| Sbjct 266 GTCTTTGATTTCTTCCCACGGCTCAGAGGTTTAACCTCTAGAAATCGATCCCCGTGTTCG 325 Query 123 ATTTCAGATGGGTACGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGCTTCCGGACT 182 | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 326 AATTCAGATGGGTATGCTCTCTCATCGTCCAATGCCTTGTACTTCAATGGTTTCCGGACT 385 Query 183 TTACCCTCCCGAAGGACGGGAAAAACCCTAGCTT-CTCTGAGCTTCAACACTAAGAGCAG 241 |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||| Sbjct 386 TTACCCTCCCGAAGGATGGGAAAAACCCTAGCTTCCT-TGAGCTTCAACACTAAGAGCAG 444 Query 242 TGCCGGTTCGAGTCTGCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 301 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 TGCTGGTTCGAGTCTCCGTAGGTTTATCAGCGATTTCAATAGCTTTATTAGGTTTCACTG 504 Query 302 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTGTCGAGCGATGA 361 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 505 CGATAAAGTGGTTCCGGAGAGCTTTGCCTCCGTCGGAGGAGTCGGATTATCGAGTGATGA 564 Query 362 GAATGGGATTAGAGAAGATGGGACTGGTGGGGTTTTGGGTGAGGAGGGCTTGCCGTTGAA 421 |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 565 GAATGGGATTAGGGAAAATGGGACTGGTGGGGTTTTGGGTGAGGAGGGATTGCCGTTGAA 624 Query 422 TGGCGTCGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 481 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 TGGTGTTGAAGCTGATCGGCCGAAGAAAGTTTTGATTTTGATGAGTGATACTGGTGGTGG 684 Query 482 CCACAGGGCTTCTGCGGAAGCCATTAAAGCTGCTTTTAACCAGGAGTTTGGAGATGAGTA 541 ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 685 TCACAGAGCTTCTGCGGAAGCCATTAGAGCTGCTTTTAATCAGGAGTTTGGAGATGAGTA 744 Query 542 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 CCAGGTGTTTATTACGGATTTGTGGACAGATCATACGCCCTGGCCGTTCAACCAGCTTCC 804 Query 602 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 CAGGAGCTATAATTTTCTGGTGAAACATGGAACTCTGTGGAAAATGACTTATTATGGTAC 864 Query 662 ATCTCCACGCATTATTCATCAATCTAATTTTGCTGCAACTTCGACTTTTATTGCCAGGGA 721 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 865 ATCTCCACGCATTGTTCATCAATCTAATTTTGCTGCAACTTCCACTTTTATTGCCAGGGA 924 Query 722 AATCGCCCAAGGGTTAATGAAATATCAACCAGACATCATAATCAGTGTTCATCCGTTGAT 781 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 925 AATCGCCCAAGGGTTAATGAAATATCAACCAGATATCATAATCAGTGTTCATCCGTTGAT 984 Query 782 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 985 GCAACATGTCCCACTTCGTGTCCTAAGATCAAAAGGCTTGCTTAAGAAAATCGTGTTCAC 1044 Query 842 CACGGTTATTACAGACTTGAGCACTTGCCATCCCACATGGTTTCATAAGCTTGTGACAAG 901 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1045 CACGGTTATTACAGACTTAAGCACTTGCCATCCTACATGGTTTCATAAGCTTGTGACAAG 1104 Query 902 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1105 ATGTTATTGCCCATCAACAGAAGTGGCAAAAAGGGCTCAAAAAGCAGGACTTGAAACATC 1164 Query 962 ACAAATCAAAGTTTATGGCCTTCCTGTTCGACCTTCCTTTGTGAAGCCTGTTCGCCCAAA 1021 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 1165 ACAAATCAAAGTTTATGGCCTCCCTGTTCGACCTTCCTTTGTGAAACCAGTTCGCCCAAA 1224 Query 1022 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 GGTTGAATTAAGAAGGGAGCTAGGGATGGATGAGAATCTTCCAGCTGTTTTGTTAATGGG 1284 Query 1082 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATTCTTTGTA 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1285 TGGAGGAGAAGGGATGGGTCCCATCGAGGCAACAGCAAGAGCACTTGCAGATGCTTTGTA 1344 Query 1142 TGATGAGAGTCTTGGTGAAGCAGTAGGTCAGGTTCTTGTAATCTGTGGACGGAACAAGAA 1201 |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1345 TGATAAGAATCTTGGTGAAGCAGTAGGTCAGGTTCTTATAATCTGTGGACGGAACAAGAA 1404 Query 1202 ACTCCAAAGCAAATTAAGCTCCTTAGATTGGAAAATCCCAGTCCAGGTTAAGGGGTTTAT 1261 |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 1405 ACTCCAAAGCAAATTAAGTTCCTTAGACTGGAAAATCCCTGTCCAGGTTAAGGGGTTTAT 1464 Query 1262 AACGAAGATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1321 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1465 AACGAAAATGGAGGAATGTATGGGTGCCTGTGACTGCATCATAACAAAGGCTGGTCCAGG 1524 Query 1322 GACTATAGCTGAAGCTATGATAAGAGGGCTACCGATAATCTTAAACGGTTACATTGCTGG 1381 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1525 CACTATAGCTGAAGCTATGATAAGAGGGTTACCGATAATCTTAAACGGTTACATCGCTGG 1584 Query 1382 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAGAACGGATGTGGGAAATTCTCAAAATC 1441 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1585 TCAAGAGGCAGGGAATGTACCGTACGTGGTGGAAAACGGATGTGGGAAATTCTCAAAATC 1644 Query 1442 ACCAAAAGAGATATCGAAAATTGCAGCGGATTGGTTTGGACCGGCATCGAAAGAGCTGGA 1501 ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| Sbjct 1645 ACCGAAAGAGATATCGAAGATTGTAGCGGATTGGTTTGGACCGGCATCGAAAGAGTTGGA 1704 Query 1502 GATAATGTCACAGAATGCATTGAGACTGGCTAGACCAGAAGCGGTGTTCAAGATAGTGCA 1561 |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| Sbjct 1705 GATAATGTCACAGAATGCATTGAGGCTGGCTAAACCAGAAGCAGTGTTCAAGATAGTGCA 1764 Query 1562 TGATATGCACGAGCTTGTCCGTCaaaaaaaTTGTCTTCCTCAACTCTCTTGCACTGCCTA 1621 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1765 TGATATGCACGAGCTTGTCCGTAAAAAAAATAGTCTTCCTCAACTCTCTTGCACTGCCTA 1824 Query 1622 ATAAT--ATATCT-T-GTAACTCTATT 1644 ||||| |||| | | ||||||||||| Sbjct 1825 ATAATCTATATATGTTGTAACTCTATT 1851 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81224481810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5