BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944834
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31500.1 | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytoch... 2678 0.0
> AT4G31500.1 | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome
P450, family 83, subfamily B, polypeptide 1 | chr4:15273471-15275310
REVERSE LENGTH=1745
Length=1745
Score = 2678 bits (1450), Expect = 0.0
Identities = 1542/1587 (97%), Gaps = 4/1587 (0%)
Strand=Plus/Plus
Query 1 TAAGTCAAACAAAGaaaaaaaTGGATCTCTTCTTGATTATAGCCGCTTTGGTAGCGGCTG 60
|||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 22 TAAGTCAAAC--AGAAAAAAATGGATCTCTTATTGATTATAGCCGGTTTAGTAGCGGCTG 79
Query 61 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGCTACCTCCGGGACCAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 80 CAGCCTTCTTTTTCCTCCGTAGCACGACCAAGAAATCTCTCCGGTTACCTCCGGGACCAA 139
Query 121 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAATCCACAACACTTCC 180
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 140 AAGGTCTTCCTATTATAGGAAACCTTCACCAGATGGAGAAATTCAACCCCCAACACTTCC 199
Query 181 TTTTCCGTCTATCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGAGGCCGTCGCC 240
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 TTTTCCGTCTCTCCAAGCTATACGGCCCGATTTTCACGATGAAAATCGGTGGCCGTCGCC 259
Query 241 TAGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAGACTCAAGACCTCAACT 300
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 260 TCGCGGTGATCTCCTCGGCCGAGCTAGCCAAGGAGCTACTCAAAACTCAAGACCTCAACT 319
Query 301 TCACCGCTCGTCCTCTCTTGAAAGGTCAACAAACGATGTCGTATCAAGGCCGTGAGCTCG 360
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 320 TCACCGCTCGTCCTCTCTTGAAAGGGCAACAAACCATGTCGTATCAAGGCCGTGAGCTTG 379
Query 361 GTTTCGGACAGTACACCGCCTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTTTCGGACAGTACACCGCGTACTACCGTGAGATGAGGAAGATGTGTATGGTGAACCTCT 439
Query 421 TCAGCCCAAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGCCAACGGATGA 480
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 440 TCAGCCCGAACCGTGTCGCAAGTTTCAGACCGGTTAGAGAAGAAGAGTGTCAACGGATGA 499
Query 481 TGGACAAGATCTACAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTCCTCT 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 TGGACAAGATCTATAAAGCCGCTGATCAATCAGGCACCGTTGATCTAAGTGAGCTTCTCT 559
Query 541 TGTCTTTCACCAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGTCTTTCACTAACTGTGTCGTATGTAGACAAGCTTTTGGGAAACGGTACAATGAGTACG 619
Query 601 GTACAGAGATGAAGAGATTCATAGACATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 660
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 620 GCACAGAGATGAAGAGATTCATAGATATCTTGTACGAGACGCAAGCACTTTTGGGCACTC 679
Query 661 TGTTTTTCTCCGACCTCTTT-CCTTATTTTGGATTCCTTGACAACCTCACTGGTCTTAGT 719
|||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 680 TGTTTTTCTCCGACCT-TTTCCCTTATTTCGGATTCCTTGACAACCTCACTGGTCTCAGT 738
Query 720 GCGCGTCTCAAGAAAGCTTTTAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 779
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 739 GCACGTCTCAAGAAAGCTTTCAAGGAGCTTGACACTTACCTTCAAGAACTTCTAGACGAG 798
Query 780 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 ACTCTTGACCCTAACCGCCCTAAACAAGAAACAGAGAGTTTCATTGATCTTTTGATGCAG 858
Query 840 ATCTACAAAGACCAACCTTTCTCCATCAAATTTACTCACGAAAATGTCAAGGCCATGATA 899
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 859 ATCTACAAAGACCAACCTTTCTCCATCAAATTCACTCACGAAAATGTCAAGGCCATGATA 918
Query 900 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCGGTGGTGGTATGGGCCATGACT 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 919 TTGGATATTGTTGTGCCGGGAACTGACACGGCGGCTGCAGTGGTGGTATGGGCCATGACT 978
Query 960 TACCTTATAAAGTACCCTGAAGCGATGAAGAAAGCTCAAGACGAAGTGAGGAATGTGATA 1019
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 979 TACCTTATTAAGTACCCTGAAGCAATGAAGAAAGCTCAAGACGAAGTGAGGAGTGTGATA 1038
Query 1020 GGCGACAAAGGATATGTCTCGGAAGAAGATATACCTAATCTCCCTTACCTCAAGGCAGTC 1079
|| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1039 GGTGACAAAGGATATGTCTCTGAAGAAGACATACCTAATCTCCCTTACCTAAAGGCAGTC 1098
Query 1080 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 ATCAAGGAGTCTCTTCGGCTCGAACCAGTCATCCCCATTCTTCTACACAGAGAAACTATC 1158
Query 1140 GCAGACGCAAAGATCGGTGGCTATGATATCCCGGCCAAGACCATCATTCAGGTGAACGCG 1199
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1159 GCAGACGCAAAGATAGGTGGCTATGATATTCCGGCCAAGACCATCATTCAGGTGAACGCA 1218
Query 1200 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TGGGCGGTTTCTCGTGACACAGCCGCGTGGGGAGACAACCCTAATGAGTTCATTCCAGAG 1278
Query 1260 AGGTTCATGAAGGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1319
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AGGTTCATGAACGAGCACAAAGGAGTGGACTTCAAGGGCCAAGATTTTGAGCTCCTACCT 1338
Query 1320 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATCGCAATGGTAGAGATA 1379
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1339 TTCGGGTCGGGCCGGAGAATGTGCCCGGCCATGCATCTTGGGATTGCAATGGTAGAGATA 1398
Query 1380 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CCTTTCGCTAACCTTCTCTACAAATTTGACTGGAGTCTACCTAAAGGGATTAAACCAGAG 1458
Query 1440 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTCCTT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1459 GATATAAAGATGGACGTCATGACTGGACTCGCTATGCACAAGAAAGAACACCTCGTTCTT 1518
Query 1500 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 GCACCAACGAAACACATCTGATGCTATATATATCATTAGGACGTTTCTGCTGGTAGATAT 1578
Query 1560 GGCGTGACCAATGGTTGTTTTTCATTG 1586
|||||||||||||||| ||||||||||
Sbjct 1579 GGCGTGACCAATGGTTATTTTTCATTG 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78312850200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5