BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944866
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31170.1 | Symbols: | Protein kinase superfamily protein | ... 2148 0.0
AT2G24360.1 | Symbols: | Protein kinase superfamily protein | ... 1112 0.0
> AT4G31170.1 | Symbols: | Protein kinase superfamily protein
| chr4:15153182-15155703 REVERSE LENGTH=1844
Length=1844
Score = 2148 bits (1163), Expect = 0.0
Identities = 1238/1275 (97%), Gaps = 2/1275 (0%)
Strand=Plus/Plus
Query 6 ACGATATTGGAAAGGATGCTTGAGAATCCAAAGTTCGATTTGCACTCTGTTGGCAATCAC 65
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 274 ACGAGATTGGAAAGGATGCTTGAGAATCCAAAGTTCGATTTGCACGCTGTTGGCAATCAC 333
Query 66 AACAATGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGGAGGAA 125
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 334 AACAACGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGGAAGAA 393
Query 126 GGTACAAACATGTCCATTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATG 185
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGTACAAACATGTCTGTTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGTCAATG 453
Query 186 TCTGTGGATAACAGTAGCGTTGGTTCTAGTGATGCTCTTATTGGCCATCCCGGTTTGAAG 245
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 454 TCTGTCGATAACAGTAGCGTTGGTTCGAGTGATGCTCTTATTGGCCATCCTGGTTTGAAG 513
Query 246 CCTATGCGCCATCCCTACTCTCTCTCTGTTGGCCAAAGCGTATTTCGCCCTGGGAAAGTT 305
|||||||||||||||||||||||||| | |||||||||||||||||| || || ||||||
Sbjct 514 CCTATGCGCCATCCCTACTCTCTCTCGGATGGCCAAAGCGTATTTCGGCCAGGAAAAGTT 573
Query 306 ACTCATGCACTTAACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 ACTCATGCACTTAACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGTATCCAACC 633
Query 366 GAGGGACTGGCAAACTATGAAGAGTGGACAATAGATTTGAGGAAACTTCATATGGGTCCT 425
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 634 GAGGGACTGGTGAACTATGAAGAGTGGACAATAGATCTGAGGAAACTACATATGGGTCCT 693
Query 426 GCTTTTGCACAAGGTGCTTTTGGAAAGTTATACAGAGGGACTTACAACGGAGAAGATGTA 485
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GCTTTTGCTCAAGGGGCTTTTGGAAAGTTATACAGAGGGACTTACAACGGAGAAGATGTA 753
Query 486 GCGATTAAGCTACTCGAGAGGTCAGACAGCAACCCTGAAAAGGCACAAGCCCTCGAACAG 545
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 754 GCCATTAAGCTACTCGAGAGGTCAGATAGCAACCCTGAAAAGGCACAAGCCCTCGAACAG 813
Query 546 CAGTTTCAGCAGGAAGTTTCTATGCTTGCTTTTTTGAAGCATCCCAACATCGTTAGGTTT 605
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 814 CAGTTTCAGCAGGAAGTTTCTATGCTTGCATTTTTGAAGCATCCTAACATCGTTAGGTTT 873
Query 606 ATTGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGT 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATTGGTGCGTGCATTAAACCGATGGTGTGGTGCATCGTGACTGAATATGCAAAAGGAGGG 933
Query 666 TCTGTCAGACAG-TTCTTGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGT 724
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCTGTCAGACAGTTTC-TGACTAAGAGACAAAACCGAGCTGTGCCTTTGAAGTTAGCTGT 992
Query 725 TATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCATGAGCGCAACTTTATACA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCATGAGCGCAACTTTATACA 1052
Query 785 CCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCCATCAAGATTGCTGA 1112
Query 845 TTTTGGCGTTGCAAGAATCGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTA 904
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGGATGACACCAGAGACTGGAACTTA 1172
Query 905 CAGATGGATGGCCCCAGAGATGATTCAGCACAGACCCTACACTCAAAAAGTGGACGTGTA 964
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1173 CAGATGGATGGCACCAGAGATGATCCAGCACAGACCCTACACTCAAAAAGTGGACGTGTA 1232
Query 965 TAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTTTGTTACCGTTCCAGAACATGAC 1024
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1233 TAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTCTGTTACCGTTCCAGAACATGAC 1292
Query 1025 GGCGGTTCAGGCTGCATTTGCAGTGGTGAACCGAGGAGTCCGTCCAACGGTCCCAGCAGA 1084
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1293 GGCGGTTCAGGCTGCATTTGCAGTGGTGAACAGAGGAGTCCGTCCAACAGTCCCAGCAGA 1352
Query 1085 TTGTCTTCCTGTGCTTGGCGAGATCATGACACGTTGCTGGGATGCGGACCCTGAAGTCCG 1144
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TTGTCTTCCTGTGCTTGGAGAGATCATGACACGTTGCTGGGATGCGGACCCTGAAGTCCG 1412
Query 1145 TCCTTGTTTTGCAGAGATTGTCAATCTTCTCGAGGCGGCGGAAACTGAGATAATGACGAA 1204
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1413 TCCTTGTTTTGCAGAGATTGTCAATCTTCTGGAGGCGGCGGAAACTGAGATAATGACGAA 1472
Query 1205 TGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAACCAATGACAATCGACTAATCTGT 1264
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1473 TGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAACCAATGACAGTCGACTAATCTGT 1532
Query 1265 TGTGAAGAAAGAGAG 1279
|||||||||||||||
Sbjct 1533 TGTGAAGAAAGAGAG 1547
> AT2G24360.1 | Symbols: | Protein kinase superfamily protein
| chr2:10364451-10366902 REVERSE LENGTH=1882
Length=1882
Score = 1112 bits (602), Expect = 0.0
Identities = 1015/1213 (84%), Gaps = 34/1213 (3%)
Strand=Plus/Plus
Query 61 ATCACAACAATGACAACAATTACTATGCCTTCACCCAAGACTTTTATCAAAAGCTCGGGG 120
|||||||||| ||||||||||||||||| || || ||||| ||||||||||| ||
Sbjct 399 ATCACAACAACGACAACAATTACTATGCTTTTACGCAAGAGTTTTATCAAAAACT---TA 455
Query 121 AGGAAGGTACAAACATGTCCATTGACAGTATGCAGACAAGTAATGCTGGAGGGTCTGTGT 180
| |||||| ||||||||||||| || ||||||||||| ||||| |||||||| ||||| |
Sbjct 456 ATGAAGGTTCAAACATGTCCATGGAGAGTATGCAGACGAGTAACGCTGGAGGATCTGTCT 515
Query 181 CAATGTCTGTGGATAACAGTAGCGTTGGTTCTAGTGATGCTCTTATTGGCCATCCC-GGT 239
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||
Sbjct 516 CAATGTCTGTGGATAACAGTAGCGTTGGTTCCAGCGATGCTCTTATTGGCCA-CCCGGGT 574
Query 240 TTGAAGCCTATGCGCCATCCCTACTCTCTCTCTGTTGGCCAAAGCGTATTTCGCCCTGGG 299
||||||||| | |||||| ||||| ||||| ||||| |||||||| |||||||| |||
Sbjct 575 TTGAAGCCTGTACGCCAT---TACTCACTCTCGGTTGGTCAAAGCGTGTTTCGCCC-GGG 630
Query 300 AA-AGTTACTCATGCACTT-AACGATGATGCCTTAGCACAAGCGTTGATGGATAGTAAGT 357
|| |||||| ||||| || || |||||||| || || ||||| ||||||||| | ||
Sbjct 631 AAGAGTTACCCATGC-GTTGAATGATGATGCTTTGGCTCAAGCACTGATGGATACCAGGT 689
Query 358 ATCCAACCG-AGGGACTGGCAAACTATGAAGAGTGGACAATAGATTTGAGGAAACTTC-A 415
||||||| | |||| ||| | |||||||| |||||||| || ||| ||||||||| || |
Sbjct 690 ATCCAACTGAAGGG-CTGACGAACTATGATGAGTGGACGATTGATCTGAGGAAAC-TCAA 747
Query 416 TATGGGTCCTGCTTTTGCACAAGGTGCTTTTGG-AAAGTTATACAGAGGGACTTACAACG 474
||||||||||| ||||| ||||| |||||||| ||| ||||||| |||||| |||||||
Sbjct 748 CATGGGTCCTGCCTTTGCTCAAGGGGCTTTTGGTAAA-TTATACAAAGGGACATACAACG 806
Query 475 GAGAAGATGTAGCGATTAAGCTACTCGAGAGGTCAGACAGCAACCCTGAAAAGGCACAAG 534
| ||||||||||| || || |||| ||| || |||| | || ||| |||||||||| ||
Sbjct 807 GTGAAGATGTAGCTATCAAAATACTTGAGCGGCCAGAGAACAGCCCAGAAAAGGCAC-AG 865
Query 535 -CCCTCGAACAGCAGTTTCAGCAGGAAGTTTCTATGCTTGCTTTTTTGAAGCATCCC-AA 592
| | ||||| ||||||||||| || || |||||||||||| ||||||||| ||| ||
Sbjct 866 TTCATGGAACAACAGTTTCAGCAAGAGGTGTCTATGCTTGCTAATTTGAAGCA-CCCAAA 924
Query 593 CATCGTTAGGTTTATTGGTGCGTG-CATTAAACCGATGGTGTGGTGCATCGTGACTGAAT 651
||| || ||||| |||||||| || | || || ||||||||||| || ||||||||||
Sbjct 925 CATTGTGAGGTTCATTGGTGCATGTC-GCAAGCCAATGGTGTGGTGTATAGTGACTGAAT 983
Query 652 ATGCAAAAGGAGGTTCTGTCAGACAGTTCTTGACTAAGAGACAAAACCGAGCTGTGCCTT 711
| || ||||||||||| || || ||||| ||||||| |||||| |||||||| || ||||
Sbjct 984 ACGCCAAAGGAGGTTCAGTGAGGCAGTTTTTGACTAGGAGACAGAACCGAGCCGTCCCTT 1043
Query 712 TGAAGTTAGCTGTTATGCAGGCGTTGGATGTTGCCAGGGGTATGGCTTACGTCCAT-GAG 770
||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||| ||
Sbjct 1044 TGAAGTTAGCTGTTAAACAGGCTTTGGATGTTGCTAGGGGTATGGCTTATGTCCATGGA- 1102
Query 771 CGCAACTTTATACACCGGGATCTAAAGTCAGATAACCTCCTCATATCAGCTGATCGGTCC 830
|||||||| |||||| | ||||| |||||||||||||| ||||| ||||| ||| ||||
Sbjct 1103 CGCAACTTCATACACAGAGATCTCAAGTCAGATAACCTTCTCATCTCAGCAGATAAGTCC 1162
Query 831 ATCAAGATTGCTGATTTTGGCGTTGCAAGAATCGAAGTTCAAACCGAAGGGATGACACCA 890
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1163 ATCAAGATTGCAGATTTTGGTGTTGCAAGAATTGAAGTTCAAACCGAAGGAATGACACCA 1222
Query 891 GAGACTGGAACTTACAGATGGATGGCCCCAGAGATGATTCAGCACAGACCCTACACTCAA 950
|| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||
Sbjct 1223 GAAACTGGAACTTACAGATGGATGGCTCCAGAGATGATACAGCATAGAGCCTACAATCAA 1282
Query 951 AAAGTGGACGTGTATAGTTTTGGAATCGTGCTGTGGGAGTTGATTACAGGTTTGTTACCG 1010
|||||||| ||||||||||| || || |||||||||||||| || ||||| | ||||||
Sbjct 1283 AAAGTGGATGTGTATAGTTTCGGGATTGTGCTGTGGGAGTTAATCACAGGACTCTTACCG 1342
Query 1011 TTCCAGAACATGACGGCGGTTCAGGCTGCATTTGCAGTGGTGAACCGAGGAGTCCGTCCA 1070
|||||||||||||| || || ||||| || ||||| || || ||| ||||||| ||||||
Sbjct 1343 TTCCAGAACATGACAGCTGTACAGGCAGCGTTTGCGGTTGTAAACAGAGGAGTGCGTCCA 1402
Query 1071 ACGGTCCC-AGCAGATTGTCTTCCTGTGCTTG-GCGAGATCATGACACGTTGCTGGGATG 1128
|| ||||| | | |||||||| || |||| || | || || ||||| || || |||||||
Sbjct 1403 ACAGTCCCAAAC-GATTGTCTCCCGGTGC-TGAGTGACATTATGACTCGATGTTGGGATG 1460
Query 1129 CGGACCCTGAAGTCCGTCCTTGTTTTGCAGAGATTGTCAATCTTCTCGAGGCGGCGGAAA 1188
| | || ||||||||||| ||||||| ||| |||| || || || || || || ||||
Sbjct 1461 CTAATCCAGAAGTCCGTCCATGTTTTGTGGAGGTTGTGAAGCTGCTTGAAGCTGCAGAAA 1520
Query 1189 CTGAGATAATGACGA-ATGTGAGAAAAGCCCGTTTCAGATGTTGCATGACGCAA-CCAAT 1246
| ||||||||||||| | | ||||||||||||||||||||||||| ||| || | || ||
Sbjct 1521 CAGAGATAATGACGACA-GCGAGAAAAGCCCGTTTCAGATGTTGCTTGA-GCCAGCCGAT 1578
Query 1247 GACAATCGACTAA 1259
||| || ||||||
Sbjct 1579 GACGATTGACTAA 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5