BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944869
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31140.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2483 0.0
> AT4G31140.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:15141200-15143391 FORWARD LENGTH=2039
Length=2039
Score = 2483 bits (1344), Expect = 0.0
Identities = 1447/1498 (97%), Gaps = 2/1498 (0%)
Strand=Plus/Plus
Query 1 CGATTTAT-TGCTCGGTTCCGATGTTGTCCAAAGGTCTTTTTGCTGTCTTTTTCGTAATC 59
|||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 362 CGATTTATCT-CTCGGTTCCGATGTTGTTCAAAGGTGTTTTTGCTGTCTTTTTCGTAATC 420
Query 60 ACTTTGTTGTACGCAAGTTTGTTAATTGAAGTTGAAGGGATTGGTGTGAACTGGGGCTCA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTTGTTGTACGCAAGTTTGTTAATTGAAGTTGAAGGGATTGGTGTGAACTGGGGCTCA 480
Query 120 CAGGCGAGGCATCCACTGCCTCCGGCCACGGTGGTGAGACTTCTCCGGGAAAACGGTATC 179
|||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 481 CAGGCGAGGCATCCCCTACCTCCGGCTACGGTGGTGAGGCTTCTCCGAGAAAACGGTATC 540
Query 180 CAAAAGGTGAAACTTTTCGAGGCCGACTCCGCGATTCTCAAAGCTTTAAGTCGGTCAGGG 239
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 541 CAAAAGGTGAAACTTTTCGAGGCCGACTCTGCGATTCTCAAAGCTTTAAGTCGGACAGGG 600
Query 240 ATTCAGGTTATGGTCGGAATCCCTAACGACTTACTTGCTCCTATAGCTGGTAGCGTTGCA 299
||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 601 ATTCAAGTTATGGTCGGAATCCCTAACGACTTGCTTGCTCCTTTAGCCGGTAGCGTTGCA 660
Query 300 GCCGCAGAGAGATGGGTCTCTCAGAATGTCTCTGCTCATGTCTCCTCTAATGGCGTCGAT 359
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GCCGCTGAGAGATGGGTCTCTCAGAATGTATCTGCTCATGTCTCCTCTAATGGCGTCGAT 720
Query 360 ATCAGGTATGTGGCAGTTGGGAATGAGCCTTTCCTAAAAGCATTCAACGGAACATTTGAG 419
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 721 ATCAGGTATGTGGCAGTTGGGAATGAGCCTTTTCTAAAAGCATTCAATGGAACATTTGAG 780
Query 420 AGTATAACTCTTCCTGCTCTTCAGAATATACAATCAGCTATCATCAAAGCCGGTTTAGCG 479
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GGTATAACTCTACCTGCTCTTCAGAATATACAATCAGCTATCATCAAAGCTGGTTTAGCG 840
Query 480 ACTCAGGTGAAAGTCACAGTGCCACTTAACGCGGATGTGTACCAAAGTGCGTCTAATCTT 539
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 841 ACTCAGGTGAAAGTCACAGTGCCTCTTAACGCAGATGTGTACCAAAGTGCGTCTAATCTC 900
Query 540 CCTTCGGATGGAGATTTCAGGCCTGAAATCCGCGATCTCATGTTGAACATTGTTAAGTTT 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 CCTTCGGATGGAGATTTCAGGCCTGAAATCCGTGATCTCATGTTGAACATTGTTAAGTTT 960
Query 600 CTGAGTGATAACCAAGCACCATTCACTATCAACATTTACCCTTTCATCAGTCTATACAAC 659
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 CTGAGTGATAACGGAGCACCATTCACTATCAACATTTACCCTTTCATCAGTCTCTACAAC 1020
Query 660 GATCCGAATTTCCCTGTGGAGTTTGCTTTCTTTGATGGAACCGGTACTCCTATAAACGAC 719
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1021 GACCCGAATTTCCCTGTGGAGTTTGCTTTCTTTGATGGAACTGGTACTCCGATAAACGAC 1080
Query 720 AATGGAAGAATCTACGACAATGTTCTTGATGCAAACTACGATACACTCGTTTGGTCTTTG 779
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1081 AATGGAAGAATCTACGACAATGTTCTTGATGCAAACTACGATACACTTGTGTGGTCGTTG 1140
Query 780 CAGAAGAATGGGTTTGGGAATTTGACTATTATTGTTGGGGAAGTTGGGTGGCCAACAGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGAAGAATGGGTTTGGGAATTTGACTATTATTGTTGGGGAAGTTGGGTGGCCAACAGAT 1200
Query 840 GGAGATAAGAACGCAAACATGATGTATGCGAGGCGGTACAACCAAGGGTTTATGAACCGT 899
|||||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||
Sbjct 1201 GGAGATAAGAACGCAAACTTGATGTATGCCAGGCGGTATAATCAAGGTTTTATGAACCGT 1260
Query 900 CAAAAGGCTAATAAAGGAACACCTATGAGACCTGGGGCAATGGATGCTTACTTGTTTGGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAAAAGGCTAATAAAGGAACACCTATGAGACCTGGGGCAATGGATGCTTACTTGTTTGGT 1320
Query 960 CTTATCGATGAAGATGCCAAAAGCATTCAGCCTGGAAACTTTGAAAGACACTGGGGGATT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTTATCGATGAAGATGCCAAAAGCATTCAGCCTGGAAACTTTGAAAGACACTGGGGGATA 1380
Query 1020 TTTTACATTGATGGACAGCCTAAGTATCAGCTCAGTCTTGGCAATGGTAACGGGCTGATC 1079
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1381 TTTTATATTGATGGACAGCCTAAGTATCAGCTCAGTCTTGGCAGTGGTAACGGGCTGATC 1440
Query 1080 CCTGCAAAGAATGTGCATTATTTGGCTAAGAAATGGTGTATTCTTGCGCCAAATGCTAAT 1139
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCTGCAAAGGATGTTCATTATTTGGCTAAGAAATGGTGTATTCTTGCGCCAAATGCTAAT 1500
Query 1140 CTTCAGGATCCTCAGTTGGGACCAAGTGTGAGCTACGCTTGTGATCATGCTGATTGCACC 1199
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1501 CTTCAGGATCCTCAGTTGGGACCAAGCGTGAGCTACGCTTGTGATCATGCTGATTGCACC 1560
Query 1200 AGTCTTGGGTATGGCTCCTCTTGTGGTAACCTGAATCTAGCACAGAATGTTTCGTATGCG 1259
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AGTCTTGGTTATGGCTCCTCTTGTGGTAACCTGAATCTAGCACAGAATGTTTCGTATGCG 1620
Query 1260 TTCAATAGCTATTACCAGGTAAGTAATCAGCTCGACAGTGCGTGTAAGTTCCCGGGTCTC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TTCAATAGCTATTACCAGGTAAGTAATCAGCTCGACAGTGCGTGTAAGTTCCCGGGTCTC 1680
Query 1320 TCTATAGTCAGTACTAGGGATCCTTCTGTTGGGAGTTGCAAATTCAAGATAATGATCAAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TCTATAGTCAGTACTAGGGATCCTTCTGTTGGGAGTTGCAAATTCAAGATAATGATCAAG 1740
Query 1380 TCAGAAGATGCTAGTGAAGCAAGTGCCATGATACCTCTTACACGATCAACGGCAGTGCTG 1439
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 1741 TCAGAAGATGCTAGTGAAGCAAGTGCCATGATGCCTATAACACGATCAACGGCAGTGCTG 1800
Query 1440 CTACTTTTCTCCATCTGTCTGTATATTGTTCTGTGAATACTGAAGAAAATTTGATGGG 1497
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 CTACTTCTCTCCATCTGTCTGTATATTGTTCTGTGAATACTGAAGAAAATTTGATGGG 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5