BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944876
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31060.1 | Symbols: | Integrase-type DNA-binding superfamil... 974 0.0
> AT4G31060.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:15116148-15117756 FORWARD LENGTH=1372
Length=1372
Score = 974 bits (527), Expect = 0.0
Identities = 578/603 (96%), Gaps = 1/603 (0%)
Strand=Plus/Plus
Query 3 TGCTTCTGTTAGGGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATGAGCTCTTC 62
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 494 TGCTTCTGTTA-GGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTC 552
Query 63 ACTGAAAGAAGCTCATGAAGATAGCAGATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 122
||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 553 ACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 612
Query 123 GTGGGGCAAGTGGGTGTCTGAAATCAGAGTTCCAAAGACTGGAAGACGAATATGGCTAGG 182
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 613 TTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGG 672
Query 183 TTCATACGATGCTCCAGAGAAGGCAGCTCGAGCCTATGATGCTGCTCTGTTTTGTATTAG 242
|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 673 TTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGATGCTGCTTTGTTCTGTATTAG 732
Query 243 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 792
Query 303 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 852
Query 363 TGTGCATGTACCTCCCCATGCCACCACACTCCCGGTAACAGCCCAGGTTCCCTCTGAAGT 422
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 853 TGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAGT 912
Query 423 TCCTACTTCCCCTGATGTATCTGCTTCTACTGAGATTACAGAGATAGTCGATGAATATTA 482
|||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 913 TCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTA 972
Query 483 TCTCCCAACCGATGCAAGTGCAGAATCAATATTCTCAGTAGAAGACTTGCAACTGGACAA 542
||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 973 TCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGTTGAAGACTTACAACTGGACAG 1032
Query 543 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAGTCTGATGTGTGACGTCACTTGC 602
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1033 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAATCTGATGTGTAACGTCACTTGC 1092
Query 603 AGT 605
|||
Sbjct 1093 AGT 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5