BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944964
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT4G30270.1 | Symbols: MERI5B, MERI-5, XTH24, SEN4 | xyloglucan... 1356 0.0
> AT4G30270.1 | Symbols: MERI5B, MERI-5, XTH24, SEN4 | xyloglucan
endotransglucosylase/hydrolase 24 | chr4:14819192-14820592
REVERSE LENGTH=1207
Length=1207
Score = 1356 bits (734), Expect = 0.0
Identities = 803/837 (96%), Gaps = 2/837 (0%)
Strand=Plus/Plus
Query 1 GTACGCGCACACACAAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGGCTCTTCTC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 124 GTACGCACACACACAAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGACTCTTCTC 183
Query 61 GTGGCGGCGTTTTC-GTTCTCCGCCGCTGATTTCAATACTGACGTCAACGTAGCTTGGGG 119
|||||||||||||| | | || || ||||||||||| |||||||||||||||||||||||
Sbjct 184 GTGGCGGCGTTTTCAG-TGTCGGCTGCTGATTTCAACACTGACGTCAACGTAGCTTGGGG 242
Query 120 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCTTTAGACAAATC 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 243 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCCTTAGACAAATC 302
Query 180 CTCTGGTTCTGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTCTGGTTCCGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 362
Query 240 TAAGCTTGTTCCTGGTAACTCAGCAGGAACAGTCACAACTTTTTACCTAAAATCTGAAGG 299
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 363 TAAGCTTGTTCCTGGTAACTCTGCAGGAACAGTCACAACTTTTTACCTAAAATCCGAAGG 422
Query 300 ATCGACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATCCACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 482
Query 360 TTTACACACTAATGTTTACACTCAAGGCAAAGGTGATAAAGAGCAACAATTCTATCTCTG 419
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 483 TTTACACACTAATGTTTACACTCAAGGTAAAGGTGACAAAGAGCAACAATTCCATCTCTG 542
Query 420 GTTCGACCCAACCGCAAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GTTCGACCCAACCGCCAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 602
Query 480 ATTGACCGTTGATGACACACCGATTAGAGAGTTTAAAAACCATGAGTCTATCGGTGTCTT 539
||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 603 ATTGACCGTCGATGACACACCCATTAGAGAGTTTAAAAACTATGAGTCTCTCGGTGTCTT 662
Query 540 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCAAGTTTATGGAACGCAGACGATTGGGC 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 663 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCGAGTTTATGGAACGCAGACGATTGGGC 722
Query 600 AACTAGAGGCGGTCTTGTTAAAACGGATTGGTCTAAAGCTCCATTCATAGCTTCTTACAG 659
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 723 AACAAGAGGCGGTCTTGTTAAAACTGATTGGTCTAAAGCTCCATTCATGGCTTCTTACAG 782
Query 660 AAACATTAAGATCGACTCGAAACCAAACTCCAACTGGTACACTCAAGAAATGGATTCGAC 719
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 783 AAACATTAAGATTGACTCGAAACCAAACTCCAATTGGTACACTCAAGAAATGGATTCAAC 842
Query 720 GAGCCAAGCTAGACTCAGATGGGTTCAGAAGAACTACATGATCTACAATTATTGTACTGA 779
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 843 AAGCCAAGCTAGACTCAAATGGGTTCAGAAGAATTACATGATCTACAATTATTGTACTGA 902
Query 780 CCGTAAGAGGTTTCCACAGGGAGCCCCTAAGGAATGCACAACAAGCTCATAGAATCT 836
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 903 CCATAGGAGGTTTCCACAGGGAGCTCCTAAGGAATGCACAACAAGCTCATAGAATCT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5