BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945103 Length=1459 Score E Sequences producing significant alignments: (Bits) Value AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:1440... 2370 0.0 > AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:14403347-14406592 REVERSE LENGTH=2068 Length=2068 Score = 2370 bits (1283), Expect = 0.0 Identities = 1404/1463 (96%), Gaps = 5/1463 (0%) Strand=Plus/Plus Query 1 AGTCTCCGACAAGGTTGGTTATGTCATCTTCTGTCCCAAACTCGGACCGGAAGATTGTTA 60 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 353 AGTCTCCGAAAAGGTTGGTTATGTCATCTTCTGTTCCAAACTCGGACCGGAAGATTGTTA 412 Query 61 CTGGTCCCGCAGGTTATATTCTTGAAGACGTTCCTCATTTCACCGACGACTTCCCTGATC 120 |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 413 CTGGTCCCGCCGGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATC 472 Query 121 ACCCTACATATCCAAATCCATTACAAGACAACGCAGCTTACTCTGTTGTTAGGCAGTATT 180 | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 473 ATCCTACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATT 532 Query 181 TCGTCGATGAGGATGACACGGTTCCTCAAAAGATAGTAGTTCATCCTGATAGTCCTAGGG 240 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 533 TTGTCGATGAGGATGACACGGTTCCTCAAAAAATAGTAGTTCATCCTGATAGTCCTAGGG 592 Query 241 GAACACATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 300 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 GAACGCATTTCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTC 652 Query 301 TTGCGTGCATTGTTACGTGTGGCGGTTTGTGTCCCGGGCTTAATACTGTGATCAGAGAGA 360 |||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 653 TTGCTTGCATTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGA 712 Query 361 TAGTTTGTGGTTTATCTTACATGTATGGTGTCAAGAGAATCCTTGGAATTGATGGAGGTT 420 |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 713 TAGTTTGTGGATTATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTT 772 Query 421 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 773 ACAGAGGATTTTACGCGAGAAACACAATCCATTTGGACTTAAAAACAGTGAATGATATCC 832 Query 481 ATAGAAGCGGAGGAACTATCCTCGGGACGTCAAGAGGCGGTCACGACACCACCAAGATAG 540 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 833 ATAGAAGCGGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAG 892 Query 541 TAGATAGTATTCAAGATCGTGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 600 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 893 TAGATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCAC 952 Query 601 AGAAAGGAGCTGCTGCTATATTCAAGGAGGTTAGGAAACG-AGGGCTTAAAGTTGCGGTT 659 |||||||||| |||||||||||| ||||| |||||||||| | |||||||||||||||| Sbjct 953 AGAAAGGAGCAGCTGCTATATTCGAGGAGATTAGGAAACGCA-AGCTTAAAGTTGCGGTT 1011 Query 660 GCCGGAATCCCGAAAACAATCGACAATGATATTCCTATTATCGATAGATCTTTTGGATTT 719 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||| Sbjct 1012 GCCGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTT 1071 Query 720 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCCCATGTCGAAGCTACAAGC 779 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1072 GACACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCTACAAGC 1131 Query 780 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 TTTGAGAATGGTATTGGTCTTGTGAAGTTAATGGGACGGTACAGCGGATTCATTGCAATG 1191 Query 840 TATGCAACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCACCATTTTTT 899 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1192 CATGCCACTCTAGCCAGCCGAGATGTGGACTGTTGCTTGATCCCGGAATCTCCATTTTTT 1251 Query 900 CTTGAAGGCCCGGGCGGGCTTTTTGAATTTATTGATAAACGGCTAAAGGAGAGTGGTCAC 959 ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1252 CTTGAAGGCTCGGGCGGGCTTTTTGAATTTATCGATAAACGGTTAAAGGAGAGTGGTCAT 1311 Query 960 ATGGTGATTGTAATTGCAGAAGGCGCGGGACAAGATCTGTTGGCTGAAAGCATGGAAGAG 1019 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| Sbjct 1312 ATGGTGATTGTAATTGCAGAAGGTGCGGGACAAGATCTGTTGTCTGAAAGCATGAAAGAG 1371 Query 1020 TCCACAATTCTGAAAGATGCCTCTGGAAACAAACTTCTACAAGACATTGGCCTGTGGATC 1079 ||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1372 TCCACAACTCTCAAAGATGCCTCTGGAAACAAACTTCTTCAAGACATTGGCCTATGGATC 1431 Query 1080 TCCCAAAGGATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1139 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1432 TCCCAAAGAATCAAGGATCATTTTGCCAAGAAGATGACCCTTACCCTCAAATATATAGAT 1491 Query 1140 CCAACCTACATGATACGGGCTATTCCGAGCAATGCATCAGACAATGTATGCTGCACACTA 1199 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || Sbjct 1492 CCAACCTACATGATACGAGCTGTTCCGAGCAATGCATCAGACAATGTATGCTGCACGCTT 1551 Query 1200 TTAGCTCAAAGCGCCGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1259 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1552 TTAGCTCAAAGCGCGGTTCATGGAGTGATGGCTGGTTACAATGGTTTCACTGTTGGCCTT 1611 Query 1260 GTCAATGGAAGACATACTTACATTCCCTTTTATAGGATCACGGAGAAACAGAACAAGGTG 1319 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1612 GTCAATGGAAGACATACTTACATTCCCTTCAATAGGATCACGGAGAAACAGAACAAGGTG 1671 Query 1320 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 GTGATCACTGACAGAATGTGGGCGAGGCTTTTGTCTTCGACGAACCAACCGAGTTTCATG 1731 Query 1380 AAGCA-G--GACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1436 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1732 AAGCAAGCTGACAAGATCCACTCAAACCAGTTGGTTGGTGAACCAGGGACCATGAAATGG 1791 Query 1437 TGATCAAGACTGTCTACAAAAAC 1459 ||||||| ||||||||||||||| Sbjct 1792 TGATCAACACTGTCTACAAAAAC 1814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71937380985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5