BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945153
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1589 0.0
> AT4G28740.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis
thaliana protein match is: tetratricopeptide repeat (TPR)-containing
protein (TAIR:AT1G02910.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14200903-14202681
FORWARD LENGTH=1331
Length=1331
Score = 1589 bits (860), Expect = 0.0
Identities = 982/1040 (94%), Gaps = 11/1040 (1%)
Strand=Plus/Plus
Query 1 TTGCAGAAAATCTAGCGAGACCAATGGCTACTCTGGTCTCGTCTCAAACTTACATCTACC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTGCAGAGAATCTAGCGAGACCAATGGCTACTCTGGTCTCGTCTCAAACTTACATCTACC 233
Query 61 ATTGTCATATTAGTAAACAAGCTCTTTATCAGACAAAAGAATCATATTCTCCTCGTAGAT 120
|||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 234 ATTGTCATATTAGTAAACAAGCTCTTTATCAGGCAAAAGAATCATACTCTCATCGTAGAA 293
Query 121 TTTCTCGTCATAATCACAGAGAAAGACTTGA-TTTT-TC-T-----CC-TAGATTGACAA 171
|||| ||||||||||||||||||||||| || |||| || | || |||||||||||
Sbjct 294 TTTCCCGTCATAATCACAGAGAAAGACTCGATTTTTCTCATAGAAACCATAGATTGACAA 353
Query 172 TAGCTAGAAAGCACCAACCTTTGTCTTTTAACACCGTGTGTTTTGCTGCAGACGAGCCCT 231
|| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 354 TAACTAGAAAGCAGCAACCTTTGTCTTTCAACACCGTGTGTTTTGCCGCAGACGAGCCCT 413
Query 232 CCGAAATCAGTGCTGATGCTAGAATCCGTAGTGAGGTTCTGTCTCCGTTCAGATCAGTCC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CCGAAATCAGTGCTGATGCTAGAATCCGTAGTGAGGTTCTGTCTCCGTTCAGATCAGTCC 473
Query 292 GTATGTTCTTCTACCTGGCCTTCATAGCTAGCGGTTCACTAGGGGGACTAATAGCCACTT 351
|||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct 474 GTATGTTCTTCTACCTCGCCTTTATAGCAAGCGGTTCATTAGGAGGACTAATAGCCACTT 533
Query 352 CCAGGCTCATCGGTGCCCTGGCGAATCCGGCTAGATCAGGCGAAGTTCTTGAGATCGTTA 411
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 CTAGGCTCATAGGTGCCCTGGCGAATCCGGCTAGATCAGGTGAAGTTCTTGAGATCGTTA 593
Query 412 AGGGTTTGGGAATTGACATTGGTGCTGCTTCTCTCTTTGCGTTCCTCTACTTCAACGAAA 471
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 594 AGGGTTTGGGAGTTGACATTGGTGCTGCTTCTCTCTTTGCGTTCCTATACTTCAACGAAA 653
Query 472 ACAAGACCAAGAACGCGCAAATGGCTAGGCTCTCGAGGGAAGAGAATCTTGCCAAACTCA 531
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 654 ACAAGACCAAGAACGCGCAAATGGCTAGGCTCTCGAGGGAAGAGAATCTTGGCAAACTCA 713
Query 532 AAATGAGGGTCGAAGAGAACAATAAGATTATCTCGGTAGGTGATCTAAGAGGCATTGCTA 591
||||||| |||||||||||||||||| | ||||| ||||||||||| ||||| ||||||
Sbjct 714 AAATGAGAGTCGAAGAGAACAATAAGGTAATCTCCGTAGGTGATCTGAGAGGGGTTGCTA 773
Query 592 GGCTTGTGATCTGCGCTGGTCCTGCGGAGTTTATTGAAGAAGCGTTTAATAGAAGTAAAG 651
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 774 GGCTTGTGATCTGTGCTGGTCCTGCGGAGTTTATTGAAGAAGCGTTTAAGAGAAGTAAAG 833
Query 652 AGTTTACACAAGGGCTTGTGGAGAGAGGTGTGGTTGTGGTGGCTTATGCTACGGATGGGA 711
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGTATACACAAGGGCTCGTGGAGAGAGGTGTGGTTGTGGTGGCTTATGCTACGGATGGGA 893
Query 712 ATTCACCGGTTTTGGAGTTTGATGAGACTGACATTGTGGATGAAGAAATAAGTCAGAGAA 771
||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 894 ATTCACCGGTTTTGGAGTTTGATGAAACTGACATTGCGGATGAAGAAATGAGCCAGAGAA 953
Query 772 GGAAGAGATTGTGGCGGGTGACTCCGGTTTTTGTCCCGGAATGGGAAAAGTGGTTAAATG 831
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGAAGAAACTGTGGCGGGTGACTCCGGTTTTTGTCCCGGAATGGGAAAAGTGGTTAAATG 1013
Query 832 AGCAGAAGAAGCTTGCCAATGTTTCTTCAGACTCTCCAGTGTATTTGTCACTGCGTTTGG 891
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1014 AGCAGAAGAAGCTTGCCAATGTTTCCTCAGACTCTCCAGTGTATTTGTCTCTGCGTTTGG 1073
Query 892 ACGGGCGTGTAAGGGCAAGTGGAGTGGGTTATCCTCCATGGCAAGCCTTTGTAGCACAAC 951
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 1074 ATGGGCGTGTAAGGGCAAGTGGAGTGGGTTATCCTCCATGGCAAGCCTTCGTTGCACAGC 1133
Query 952 TTCCACCGGTTAAGGGAATCTGGACCGGTCTTCTTGACGGTATGGATGGTAGAGTGTAAA 1011
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TTCCTCCGGTTAAGGGAATGTGGACCGGTCTTCTTGACGGTATGGATGGTAGAGTGTAAA 1193
Query 1012 TACTCTTAATACTTTAGGGA 1031
|||||| ||||||| |||||
Sbjct 1194 TACTCT-AATACTT-AGGGA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5