BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945162
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28660.2 | Symbols: PSB28 | photosystem II reaction center P... 743 0.0
> AT4G28660.2 | Symbols: PSB28 | photosystem II reaction center
PSB28 protein | chr4:14149880-14151098 FORWARD LENGTH=890
Length=890
Score = 743 bits (402), Expect = 0.0
Identities = 464/494 (94%), Gaps = 4/494 (1%)
Strand=Plus/Plus
Query 91 GGCATTGTCTTATCTTCATGCTCTCTTCTTCCCATCAAAGGCTCCTCTTTCACTGGCTCC 150
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||
Sbjct 243 GGCATTGTCTTATCTTCATGCTCTGTTCTTCCCATCAAAAGCTCATCTTTCACTGGATCC 302
Query 151 CCTGTTTCTCTCCCGCGGGCTCAACCCTCATCCCGAACAGCTCTGAGACCGAGGAAACCC 210
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 303 CCTGTTTCTCTCCCGCGGGCTCAACCATCATCCCGAACAGCTCTAAGACCGATGAAACCC 362
Query 211 GTCTCTATCACGATGATGGTAAAACCGACGCTCCAATTCATTCAAGGGACGGATGAGATG 270
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 363 GTCTCTATCACGATGATGGTAAAGCCGGCGCTCCAATTCATCCAAGGGACGGATGAGATG 422
Query 271 ACCATCCCTGATGTTAAGCTGACTCGGTCAAGAGACGG-ATCTAACGGAATGGCACTCTT 329
|| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||| ||
Sbjct 423 ACAATCCCTGATGTTAAGCTGACTCGATCAAGAGACGGAAGC-AACGGAATGGCACTGTT 481
Query 330 CTCTTTTGATCAGCCATCGGTTTTCGACTCGAGCGGTGAAGTCGGGGAGATTACAGGATT 389
|||||| || || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 482 CTCTTTCGACCAACCATCCGTTTTCGACTCGAGCGGTGAAGTCGGAGAGATTACAGGATT 541
Query 390 GTACATGATCGATGAGGAAGGTGTGATTCAGTCGACGGATGTAAACGCGAGATTCGTGAA 449
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 542 GTACATGATTGATGAGGAAGGTGTGATTCAGTCGACGGATGTGAACGCGAGATTCGTGAA 601
Query 450 TGGGAAACCGGAAGGGATTGTGGCGAAACACATTATGCGAA-GTCCGAAAGAATGGGACA 508
||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||
Sbjct 602 TGGGAAACCGGAAGGGATTGTGGCGAAGCACATAATGCGATCG-CCGAAAGAATGGGACA 660
Query 509 GGTTCATGAGGTTTATGGAGCGATACTCAGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 568
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 661 GGTTCATGAGGTTTATGGAGCGATACTCGGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 720
Query 569 AATGAGGTGGGAGA 582
|||||||| |||||
Sbjct 721 AATGAGGTTGGAGA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5