BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945213 Length=1764 Score E Sequences producing significant alignments: (Bits) Value AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:1... 2793 0.0 > AT4G28220.1 | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13992997-13995831 FORWARD LENGTH=1977 Length=1977 Score = 2793 bits (1512), Expect = 0.0 Identities = 1680/1761 (95%), Gaps = 12/1761 (1%) Strand=Plus/Plus Query 7 AGACTCTTCACCAGAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCCCCA 66 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 67 AGACTTTTCACCAAAATGACATTACTTTCCTCTCTCGGAAGAGCCTCTCGATCTGCTCCA 126 Query 67 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACTCA 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 127 CTTGCCTCTAAGCTCCTCCTCCTCGGCACTCTCAGCGGTGGAAGTATAGTGGCATACGCT 186 Query 127 GATTCTAACGCAGAAGCTAACAAAAACGAGGACCAGCAGCTGAAGAAGAAGAAAGTAGTT 186 ||| |||||| ||||||||||||||| |||| |||| | |||||||||||||||||| Sbjct 187 GATGCTAACGAAGAAGCTAACAAAAAGGAGG---AGCA--T-AAGAAGAAGAAAGTAGTT 240 Query 187 GTACTTGGGACTGGATGGGCTGGTATAAGCTTT-CTTAAAGATCTCGACATTACTTCCTA 245 || ||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 241 GTGCTTGGGACTGGTTGGGCTGGTATAAG-TTTCCTTAAAGATCTCGACATAACTTCCTA 299 Query 246 CGATGTTCAGGTTGTGTCTCCACAGAACTACTTTGCCTTTACACCATTGTTACCTAGCGT 305 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 300 CGATGTTCAGGTTGTGTCTCCCCAGAACTACTTTGCCTTTACGCCATTGTTACCTAGCGT 359 Query 306 CACTTGTGGAACTGTTGAAGCTAGAAGTATTGTAGAGTCTGTCCGTAATATAACaaaaaa 365 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || || Sbjct 360 CACTTGTGGAACTGTTGAAGCTAGAAGCATTGTGGAGTCTGTCCGTAATATAACCAAGAA 419 Query 366 gaaaaaTGGGGAAATTGAATTATGGGAAGCAGATTGTGTTAAGATCGATCCTGTTAACCA 425 ||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||| || Sbjct 420 GAAAAATGGGGAAATTGAATTGTGGGAAGCAGATTGTTTTAAGATTGATCATGTTAATCA 479 Query 426 CAAGGTTCACTGTCGACCGGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAGTTTTCGCT 485 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 480 GAAGGTTCACTGTCGACCAGTTTTCAAGGATGATCCTGAAGCAAGCCAAGAATTTTCCCT 539 Query 486 TGGATATGACTACTTGATTGTTGCAGTGGGAGCTCAAGTTAATACATTTGGCACTCCTGG 545 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 540 TGGATATGACTACTTGATCGTAGCAGTGGGAGCTCAAGTTAACACATTTGGCACTCCTGG 599 Query 546 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTGGAGGATGCACAGAGAATTCGTAGAGG 605 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 600 TGTACTTGAGAATTGCCATTTTCTCAAGGAAGTAGAGGATGCACAGAGGATTCGTAGAGG 659 Query 606 AGTGATTGATTGCTTTGAGAAAGCAATCCTTCCTGGCCTTACTGAGGAACAAAGAAGAAG 665 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 660 AGTGATTGATTGCTTTGAAAAAGCAATCCTTCCTGGCCTCACTGAGGAACAAAGAAGAAG 719 Query 666 AAAGCTTCATTTTGTTATTGTGGGAGGAGGTCCAACTGGTGTGGAGTTTGCAGCTGAGCT 725 ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 720 AAAGCTTCATTTTGTAATCGTGGGAGGAGGTCCTACTGGTGTGGAGTTTGCAGCTGAGCT 779 Query 726 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTGAA 785 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 780 ACATGACTTTATTATAGAGGATATCACCAAAATATACCCTTCAGTCAAAGAGCTCGTAAA 839 Query 786 AATAACACTCATTCAATCTGGAGATCATATTCTGAATTCGTTTGATGAACGTATAAGTTC 845 |||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct 840 AATAACACTCATTCAATCTGGAGACCATATTCTGAATACGTTTGATGAACGTATCAGTTC 899 Query 846 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACAGGAATGCGTGTAAT 905 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 900 ATTTGCTGAACAAAAGTTCACGCGAGATGGTATTGATGTTCAGACTGGAATGCGTGTAAT 959 Query 906 GTCTGTGACTGATAAAGATATCACTGTGAAAGTCAAATCAAGTGGAG-ACGTCGTAAGTA 964 |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| Sbjct 960 GTCTGTGACTGATAAAGATATCACAGTGAAAGTCAAATCAAGTGGAGAAC-TCGTAAGTA 1018 Query 965 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TTCCTCATGGATTGATATTGTGGTCCACTGGAGTTGGAACCCGTCCAGTTATCAGCGACT 1078 Query 1025 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGTTGGCAACTAACGAGTGGTTACAAG 1084 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1079 TCATGGAGCAAGTTGGCCAAGGAGGCAGACGTGCGGTGGCAACTAACGAGTGGTTACAAG 1138 Query 1085 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TGACAGGATGTGAGAATGTATATGCAGTTGGCGATTGTGCTTCCATAGCTCAACGAAAAA 1198 Query 1145 TCATGGGGGATATTGCAAACATATTCAAAGCTGCAGATGTGGACAACTCAGGAACCTTGA 1204 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1199 TCTTGGGGGATATTGCAAACATATTCAAAGCTGCAGATGCGGACAACTCAGGAACCTTGA 1258 Query 1205 CCATGGAAGAGTTACAAGACGTGGTTGATGATATTCTTGTGAGGTACCCGCAGGTGGAGC 1264 |||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||| Sbjct 1259 CCATGGAAGAGTTAGAAGGCGTGGTTGATGATATTATTGTGAGGTATCCGCAGGTGGAGC 1318 Query 1265 TCTACCTGAAAAGCAAGCATATGAGGAATATTAACGATCTGCTGGCAGATTCTCAAGGAA 1324 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1319 TCTACCTGAAAAGCAAGCATATGAGGCATATTAACGATCTGCTGGCAGATTCTGAAGGAA 1378 Query 1325 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCGCGGAGGTTGATTCAC 1384 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1379 ATGCAAGGAAAGAAGTAGACATTGAGGCATTCAAATTGGCTCTCTCGGAGGCTGATTCAC 1438 Query 1385 AGATGAAGACCCTGCCTGCAACTGCTCAGGTCGCTGCACAGCAAGGTGCTTATCTTGCAA 1444 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1439 AGATGAAAACCCTGCCTGCAACTGCTCAGGTCGCTGCCCAGCAAGGTGCTTATCTTGCAA 1498 Query 1445 AATGCTTCAACAGGATGGAGCAGTGCAAAGAGCAACCTGAAGGTCCTAAGCGCTTTAGAA 1504 ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| Sbjct 1499 AATGCTTCAACAGGATGGAGCAGTGTAAAGAGCTACCTGAAGGTCCTAAGCGCTTCAGAA 1558 Query 1505 CTGGCGGGCATCACCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAT 1564 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 CTGGCGGGCATCATCAGTTTCGCCCCTTCCAGTACAAGCACTTTGGACAATTTGCTCCAC 1618 Query 1565 TGGGAGGGGACCAAGCAGCTGCCGAATTACCTGGAGACTGGGTTTCAGCTGGAAGAAGCG 1624 | ||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||| Sbjct 1619 TAGGAGGGGACCAAGCAGCAGCTGAACTACCTGGAGACTGGGTTTCAGCTGGAAAAAGCG 1678 Query 1625 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGAGCTC 1684 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1679 CCCAGTGGCTCTGGTATTCTGTTTATGCCAGCAAGCAAGTTAGCTGGCGAACGAGGGCTC 1738 Query 1685 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGACTCAAGCCGCATCTGAG 1744 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1739 TGGTGGTGTCGGACTGGACAAGGAGGTACATATTCGGGAGGGATTCAAGCCGCATCTGA- 1797 Query 1745 C-CAATACTGCATCTTATAAT 1764 | ||||||||||| || |||| Sbjct 1798 CTCAATACTGCATTTTGTAAT 1818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87248547210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5