BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945245 Length=1295 Score E Sequences producing significant alignments: (Bits) Value AT4G27940.1 | Symbols: ATMTM1, MTM1 | manganese tracking factor... 2052 0.0 > AT4G27940.1 | Symbols: ATMTM1, MTM1 | manganese tracking factor for mitochondrial SOD2 | chr4:13904474-13907245 FORWARD LENGTH=1722 Length=1722 Score = 2052 bits (1111), Expect = 0.0 Identities = 1231/1287 (96%), Gaps = 15/1287 (1%) Strand=Plus/Plus Query 11 aaaaaaGTTAAATGGTTGAAGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAATGT 70 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 261 AAAAAAGTTAAATGGTTGAGGCAGAGCGCGCGGAGAATAGTTGGATTGCTTCGGAAACGT 320 Query 71 CGT-CGTCGTCGTCTCCGGCGGCAATAGAAAGCCGTGATTTTTCGATCATTGATTCGAGT 129 | | ||||||||||||||| || |||||||||| ||||||||||||| | | | | Sbjct 321 C-TCCGTCGTCGTCTCCGGTGGTAATAGAAAGCAGTGATTTTTCGAT-A---A--C---T 370 Query 130 GATGGTGGAATAAGAGATGTGAGAGGATTTGGTATAGCTTCTCGGCCTCAGTTGGAGAAG 189 || |||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 371 GA---TGGAATGAGAGATGTGAGCGGATTTGGTATAGCTTCTCGACCTCAGTTGGACAAG 427 Query 190 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 GGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGCCGGAGCTGCG 487 Query 250 GTTTTGTCTGCTGTTACTTTAAATCCTCTTGACGTTGTTAAGACTCGATTGCAAGCTCAA 309 |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 488 GTTTTGTCCGCCGTTACTCTAAATCCTCTTGACGTTGTCAAGACTCGATTGCAAGCTCAA 547 Query 310 GCCGCCGGAATGTCTTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 369 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 GCCGCCGGAATGTCGTACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTT 607 Query 370 GGACCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTTCACGCGCTGGTGTT 429 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 608 GGCCCAAACATGATGTTTGCAGACTTGAGATGTTCTCCTTCATGTGCACGCGCTGGTGTT 667 Query 430 CAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACTTTTGATGTC 489 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 668 GAAGGTACTGTTTCTATTTGCCCACCGGATTGTTTCCAGTACAAAGGAACATTTGATGTC 727 Query 490 TTCACCAAGATTATACGACAGGAGGGTCTAGCACGCCTTTGGAGAGGGACTAATGCTGGT 549 ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 728 TTCACCAAGATCATACGACAGGAGGGTCTGGGACGCCTTTGGAGAGGGACTAATGCTGGT 787 Query 550 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTTCGCAAC 609 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 788 CTTGCCCTAGCTGTGCCCATGGTTGGGATATATCTCCCATTCTATGATATGTTCCGCAAC 847 Query 610 CGATTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 669 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 CGGTTGGAAGAATTATCTCGGGAGAAAGCTCCTGCTATGACATTTTGTGTGCCTACTGTG 907 Query 670 GCAGGGTCCTTAGCGCGGTCCTTAGCTTGTACAGTGTGCTATCCTATAGATCTTGCAAGA 729 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 908 GCAGGGTCTTTAGCGCGGTCCTTAGCTTGTACAGTCTGCTATCCTATTGATCTTGCAAGA 967 Query 730 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCTGGTGTGAAGCCTCCGGGAGTTTTTAAA 789 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 968 ACGCGTATGCAGGCATTCAAAGAAGCAAAAGCCGGTGTGAAGCCTCCGGGAGTTTTTAAA 1027 Query 790 ACTCTAGTTGGTGTATTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGTTTGCAC 849 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1028 ACTCTAGTTGGTGTTTTCTCTGAAGTCAGGACAGCAAATAACCTTGAAAGTAGCTTGCAC 1087 Query 850 AACTATCGTGTTCTCTGGAGAGGTTTGGGTGCACAGCTTGCCCGTGATGTTCCATTTTCA 909 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1088 AACTATCGTGGTCTCTGGAGAGGCTTGGGTGCACAGCTTGCCCGTGATGTTCCATTCTCA 1147 Query 910 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTTCTTGGAGTTGCGGGCAAT 969 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1148 GCAATCTGCTGGTCGACCCTCGAGCCAATAAAAAAGAGGCTCCTTGGAGTTGCGGGCAAT 1207 Query 970 GATACAAATCTTCTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGTTTTATAGCTGGTAGT 1029 |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1208 GATACAAATCTTGTTGGTGTTTTCGGTGCAACCTTTTCTGCTGGATTTATAGCTGGAAGT 1267 Query 1030 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1089 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1268 ATCGCTGCTGCTGCTACTTGTCCTCTTGACGTTGCAAGAACAAGAAGACAGATAGAGAAG 1327 Query 1090 GACCCTGGTAGGGCATTGATAATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1149 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1328 GACCCTGGTAGGGCATTGATGATGACGACACGACAGACACTAATAGAGGTTTGGAGGGAT 1387 Query 1150 GGAGGGATGAGAGGCCTGTTCATGGGAATGGGTCCACGAGTGGCGCGTGCAGGACCGTCG 1209 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1388 GGAGGGATGAGAGGACTGTTCATGGGAATGGGTCCACGAGTGGCACGTGCAGGACCATCG 1447 Query 1210 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1448 GTAGGGATAGTGGTTTCCTTCTACGAAGTGGTCAAGTATGTTCTGCATCGCCATGCTTCA 1507 Query 1270 TCATGACCA-GCAAAGTCACTAATCTC 1295 |||||||| ||||||||||||||||| Sbjct 1508 TCATGACCCTGCAAAGTCACTAATCTC 1534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63704491605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5