BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945273
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27670.1 | Symbols: HSP21 | heat shock protein 21 | chr4:138... 1114 0.0
> AT4G27670.1 | Symbols: HSP21 | heat shock protein 21 | chr4:13818870-13819971
REVERSE LENGTH=938
Length=938
Score = 1114 bits (603), Expect = 0.0
Identities = 686/726 (94%), Gaps = 5/726 (1%)
Strand=Plus/Plus
Query 1 TTTGGCTCATACTCTAAACATATGGCTTCTACACTCTCA-TT--TGCATCGGCTCTACGT 57
|||||||||||||| ||||| |||||||||||||||||| || ||||||||||||| ||
Sbjct 56 TTTGGCTCATACTCGAAACAAATGGCTTCTACACTCTCATTTGCTGCATCGGCTCTATGT 115
Query 58 TCACCTCTTGCTCCATCTCCCTCTATCTCATCCAAATCCACTACTCCGTTCTCCGTCGCG 117
|||||||||||||||||||| ||| ||||||| || ||| |||| |||||||| || ||
Sbjct 116 TCACCTCTTGCTCCATCTCCTTCTGTCTCATCGAAGTCCGCTACACCGTTCTCGGTTTCG 175
Query 118 CTT-CCACGGAAGATCCCTAGCCGGATCAGGGCTCAAGACCAGAGAGAAAACTCCATTGA 176
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 -TTCCCACGGAAGATCCCTAGCCGGATCAGGGCTCAAGACCAGAGAGAAAACTCCATTGA 234
Query 177 TGTTGTTCACCAAGGACAACAAAAAGGAAATCAAGGATCTAGTGTCGAAAAAAGACCTCA 236
||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 235 TGTTGTTCAGCAAGGACAACAAAAAGGGAACCAAGGATCAAGTGTCGAAAAAAGACCTCA 294
Query 237 ACAACGCTTAGCCATGGACGTTTCTCCTTTCGGATTGTTGGATCCTTTGTCACCAATGAG 296
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 295 ACAACGCTTAACCATGGACGTCTCTCCTTTCGGATTGTTGGATCCTTTGTCACCAATGAG 354
Query 297 GACAATGAGACAAATGTTAGATACTATGGACCGGATGTTCGAGGACACTATGCCTGTCTC 356
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 GACGATGCGACAAATGTTAGATACTATGGACAGGATGTTCGAGGACACTATGCCTGTCTC 414
Query 357 AGGAAGAAACAGAGGAGGAAGTGGAGTTTCAGAGATTCGTGCGCCGTGGGACATTAAAGA 416
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 415 AGGAAGAAACAGAGGAGGAAGTGGAGTGTCAGAGATTCGTGCACCGTGGGACATCAAAGA 474
Query 417 GGAAGAACACGAGATCAAGATGCGTTTCGACATGCCTGGTCTCTCGAAAGAGGATGTCAA 476
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 475 GGAAGAACACGAGATCAAGATGCGTTTCGACATGCCTGGTCTCTCTAAAGAAGACGTCAA 534
Query 477 AATCTCTGTAGAAGATAACGTCCTTGTGATCAAAGGAGAGCAGAAGAAGGAAGACAGTGA 536
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 535 AATCTCTGTAGAAGATAACGTACTTGTGATCAAAGGAGAGCAGAAGAAGGAAGACAGTGA 594
Query 537 TGATTCTTGGTCTGGAAGAAGCGTTAGCTCATATGGAACACGACTTCAGCTCCCAGACAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TGATTCTTGGTCTGGAAGAAGCGTTAGCTCATATGGAACACGACTTCAGCTCCCAGACAA 654
Query 597 CTGCGAGAAAGACAAGATCAAAGCTGAGCTCAAGAACGGAGTCCTGTTTATCACTATCCC 656
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 655 CTGTGAGAAAGACAAGATCAAAGCTGAGCTCAAGAACGGAGTCCTCTTTATCACTATCCC 714
Query 657 TAAAACCAAAGTCGAACGCAAAGTCATCGATGTCCAGATTCAGTAGGACTCCTTTAACGT 716
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 715 TAAGACCAAAGTCGAACGCAAAGTCATCGATGTCCAGATTCAGTAGGACTCGATCAACAT 774
Query 717 TATCCT 722
||||||
Sbjct 775 TATCCT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5