BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945300
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27520.1 | Symbols: ENODL2, AtENODL2 | early nodulin-like pr... 1430 0.0
> AT4G27520.1 | Symbols: ENODL2, AtENODL2 | early nodulin-like
protein 2 | chr4:13750440-13751905 REVERSE LENGTH=1364
Length=1364
Score = 1430 bits (774), Expect = 0.0
Identities = 995/1094 (91%), Gaps = 46/1094 (4%)
Strand=Plus/Plus
Query 1 TCTCACAGCTTTTGAAAACCATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TCTCGCAGCTTTTGAAAAACATGACCTTTCTAAAAATGAAAAGCCTTTCTTTCTTCTTCA 126
Query 61 CCATCCTCCTCTCTCTTTCTACGTTCTTCACCATCTCCGACGCACGGAAGTTTAATGTCG 120
|||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 127 CCATCCTCCTCTCTCTCTCGACCCTCTTCACCATCTCCAACGCACGGAAGTTTAATGTCG 186
Query 121 GAGGCAGCGGCGCGTGGGTTCCAAACCCACCTGAAAATTACGAATCTTGGTCTGG-AAGA 179
||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| || |
Sbjct 187 GAGGCAGTGGCGCGTGGGTTACAAACCCACCTGAAAACTACGAATCTTGGTCTGGCAA-A 245
Query 180 AACCGTTTCCTTGTTCACGACACACTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 246 AACCGTTTCCTTGTTCACGACACTCTCTATTTTAGCTACGCTAAGGGAGCTGACTCGGTG 305
Query 240 GTAGAGGTAAACAAGGCTGATTACGACGCTTGTAATTCAAAGAATCCGATCAAAAGAGTG 299
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 306 CTAGAGGTGAACAAGGCTGATTACGACGCTTGTAATACAAAGAATCCGATCAAAAGAGTG 365
Query 300 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GACGATGGAGATTCTGAGATCTCTCTTGATCGTTATGGTCCGTTTTACTTCATCAGTGGC 425
Query 360 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTGCTGTTGTTGTCATATCTGCTAGGGTT 419
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct 426 AATGAAGATAACTGTAAGAAGGGTCAAAAGCTTAATGTCGTTGTCATATCTGCTAGGATT 485
Query 420 CCATCAACGGCTCAGCCTCCTCACGCTGCTGCACCGGGAAG-T-T-C-------T-A--- 465
||||||||||||||| |||||||||| |||||||||||||| | | | | |
Sbjct 486 CCATCAACGGCTCAGTCTCCTCACGCCGCTGCACCGGGAAGCTCTACGCCGGGATCAATG 545
Query 466 -C---GCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 521
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ACTCCGCCGGGAGGAGCCCACTCGCCTAAATCTTCCTCCCCTGTTTCTCCGACGACTTCT 605
Query 522 CCACCGGGATCAA-TGG-CC-CCTA-A--A--TC-CG-G--T---TCC-CAT--G--GT- 560
|| |||||||| | | || ||| | | || | | | || ||| | ||
Sbjct 606 CCTCCGGGATCGACTACTCCGCCTGGAGGAGCTCACTCGCCTAAATCTTCATCAGCTGTC 665
Query 561 TCTCCGATGACTTCACCGCCGGGATCAATGGCTCCTAAATCCGA-TACTCCTGTTTCTCC 619
|||||| |||||| || || ||||||||||| |||||||||| | | |||||||||||
Sbjct 666 TCTCCGGCGACTTCTCCTCCAGGATCAATGGCGCCTAAATCCGGCTCC-CCTGTTTCTCC 724
Query 620 GGCGACTTCTCCCCCGGCTCCACCTAAATCCACTTCCCCTGTTTCCCCATCCTCTGCTCC 679
| ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 725 GACGACTTCACCACCGGCACCACCTAAATCCACGTCCCCTGTTTCCCCATCCTCTGCTCC 784
Query 680 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCCACTGTTCCTCCGTCTTC 739
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 785 GATGACTTCACCGCCGGCACCAATGGCACCTAAATCATCTTCAACTATTCCTCCGTCTTC 844
Query 740 TGCTCCGATGACTTCACCACCTGGACCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 799
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 845 TGCTCCGATGACTTCACCACCTGGATCAATGGCACCTAAATCTTCATCCCCTGTTTCAAA 904
Query 800 CTCACCCGCCGTTTCTCCATC-TTCGGCTCCGGGAGGCTCTGCTTCTTCTTCACCGTCAG 858
||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 905 CTCACCCACCGTTTCTCCATCGTT-GGCTCCGGGAGGCTCTACTTCTTCTTCACCGTCAG 963
Query 859 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCGGGAGATGGTCCATCAGCCTCCGGTGATA 918
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 964 ATTCTCCGTCAGGCTCGGCGATGGGTCCTTCAGGAGATGGTCCATCAGCCGCTGGTGATA 1023
Query 919 TCACTACGCCGGCGGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGGCCGTTA 978
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1024 TCTCTACGCCGGCTGGAGCTCCAGGGCAGAAAAAATCGTCGGCGAATGGTATGACCGTTA 1083
Query 979 TGTCTATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTATGTCAGCTTAAGAACACT 1038
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1084 TGTCGATTACTACGGTTTTAAGTTTGGTTTTGACCATCTTTCTGTCAGCTTAAGAACACT 1143
Query 1039 TG-GAGACTTGTTT 1051
|| |||||||||||
Sbjct 1144 TGTGAGACTTGTTT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5