BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945307
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27450.1 | Symbols: | Aluminium induced protein with YGL an... 1310 0.0
> AT4G27450.1 | Symbols: | Aluminium induced protein with YGL
and LRDR motifs | chr4:13727484-13728886 REVERSE LENGTH=1137
Length=1137
Score = 1310 bits (709), Expect = 0.0
Identities = 749/769 (97%), Gaps = 0/769 (0%)
Strand=Plus/Plus
Query 12 AGGAGAGAAATGTTGGCTATCTTTCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 71
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 195 AGGAGAGAAATGTTGGCTATCTTCCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 254
Query 72 AGTCCGGCATCTGAGAAATACTCTAAACAACCAAAACTTCCAGAGGAAACCCTAAACGAT 131
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 255 AGTCCGGCATCTGAGAAATGCTCTAAACAACCAAAACTTCCAGAAGAAACCCTAAATGAT 314
Query 132 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCAGCTGTTCTT 191
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCTGCTGTTCTT 374
Query 192 GCTTACGTTCGTCCCTCTGCTTCTTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 251
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 375 GCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 434
Query 252 GACATCTACTGTCTGTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAATAT 311
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 435 GACATCTACTGTCTCTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAGTAT 494
Query 312 GGTCTGACCAAGACAACAAATGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 371
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 GGTCTCACCAAGACAACAAACGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 554
Query 372 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGCAGCTTTTCCTTT 431
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 555 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGTAGCTTTTCCTTT 614
Query 432 GTGGTTTATGATAGCAAAGCCGGTTCTGTCTTCACGGCTCTGGGATCTGATGGAGGGGTG 491
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 615 GTGGTTTATGATAGCAAAGCCGGCTCTGTCTTCACTGCTCTGGGATCTGATGGAGGGGTG 674
Query 492 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 734
Query 552 ATTAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTCCCTACAGGGTGTATGTTCCATAGT 611
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 ATCAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTTCCTACAGGGTGTATGTTCCATAGT 794
Query 612 GAAGGAGGGTTAATGAGCTTTGAGCATCCGATGAATAAGATCAAGGCGATGCCGAGAGTG 671
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 795 GAAGGAGGGTTAATGAGCTTTGAGCATCCAATGAACAAGATCAAGGCGATGCCGAGGGTA 854
Query 672 GACAGTGAGGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 731
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GACAGTGAAGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 914
Query 732 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 780
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5