BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945315
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27390.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1072 0.0
> AT4G27390.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages; Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:13703139-13704693 REVERSE LENGTH=1024
Length=1024
Score = 1072 bits (580), Expect = 0.0
Identities = 692/745 (93%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 1 GGGAAAAACCAAATTCAGACGATGGCTTCGATTCCGCAGATGATCTTTTGTAACTTCTCT 60
||| ||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 19 GGG-AAATCAAAATTCAGACGATGGCTTCGATTCCGCAGATTATCCTTTGTAACTTCTCC 77
Query 61 ATACACGATGGTTTCAACAAAGTACCCAGAAACATATCACACGCGAAAGGACGGAGCTTG 120
|||||||| ||||||||||| | |||||| |||| || |||||| ||| |||||||||||
Sbjct 78 ATACACGACGGTTTCAACAAGGAACCCAGTAACAGATTACACGCTAAAAGACGGAGCTTG 137
Query 121 GGTCCTTCTCTGCTCCAAAACAAGTTGGGGTTGAGAGCTTGCTTGATTGAGCATAGACAG 180
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GCTCCTTCTATGCTCCAAACCAAGTTGGGGTTGAGAGCTTGCTTGATTGAGCATAGACAG 197
Query 181 AGACGA-CGATTGATGGGTCTGGGAGAAATTGGAATGCTAGCTAGTGAGAAAGCTCTTAA 239
|||| | ||| |||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 198 AGAC-AGCGAGTGATGGGTCTGGGAGATATTGGGATGCTAGCTAGTGAGAAATCTCTTAA 256
Query 240 CCGGAGAAGACGGGTGGTTAGGGTTAGGGGTTTGAAGTTTAATGGCGGAGATAACAACGG 299
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 257 CCGTAAAAGACGGGTGGTTAGGGTTAGGGGTTTGAAGTTTAATGGTGGAGATAACAACGG 316
Query 300 AAATGGGAGGATTCTCGGAAACCTTGCTTTGGCTATTGGTTTAACTTATCTCTCTATGAC 359
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 317 AAATGGGAGGATTCTCGGAAACCTTGCTTTGGCCATTGGCTTGACTTATCTCTCTATGAC 376
Query 360 TGGTCAGCTTGGTTGGATTTTGGATGCTATTGTCTCTGTCTGGCTTATTGTGGTGATTGT 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 377 TGGTCAGCTTGGTTGGATTTTGGATGCTATTGTCTCTGTCTGGCTGATTGTGGTGATTGT 436
Query 420 TCCAATTTTGGGTTTGGGAGC-TTTTCTATGGTGGGCACAACGAGATATTGTCCAGAGCA 478
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 437 TCCAATTTTGGGTTTGGGAGCCTTTTTT-TGGTGGGCACAACGAGATATTGTCCAGAGCA 495
Query 479 ATTGTCCGAATTGTGGAAACGAGTTTCAGATATTCAAGTCAGCGACGGATGATGAAGTAC 538
||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 496 ATTGTCCTAATTGTGGAAATGAGTTTCAGATATTCAAGTCAGCGATGGATGATGAAGTTC 555
Query 539 AGCTTTGCCCTTTCTGCAGTCAGCCATTCTCAGTGGTGGATGATAAGTTTGTTATGGAGC 598
|||||||||||||||| | ||| ||||||||||| ||||||||||||||||||| ||| |
Sbjct 556 AGCTTTGCCCTTTCTGTACTCAACCATTCTCAGTCGTGGATGATAAGTTTGTTAAGGAAC 615
Query 599 CAGTGAAATTCTCCAACCAAACTGCTGCTTTTGGACAAGACTTAAATGGGTTCTCTTCTA 658
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 616 CAGTGAAATTCTCCAACCAAACTACTGCTTTTGGACAAGACTTAAATGGGTTTTCTTCTA 675
Query 659 AGCCTAAGCCTAAGAAAGGAAAGGGTTCCTCAACAGCGGTTGTAGACATAGAAGCAGAAG 718
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 676 A----A--CCTAAGAAAGGAAAGGGTTCCTCAACAGCAGTCGTAGACATAGAAGCAGAAG 729
Query 719 TAACAGATGCAGACTGACAATGCGA 743
|||||||||||||||||||||||||
Sbjct 730 TAACAGATGCAGACTGACAATGCGA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5