BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945327 Length=617 Score E Sequences producing significant alignments: (Bits) Value AT4G27310.1 | Symbols: | B-box type zinc finger family protein... 523 7e-148 > AT4G27310.1 | Symbols: | B-box type zinc finger family protein | chr4:13675638-13676910 FORWARD LENGTH=1181 Length=1181 Score = 523 bits (283), Expect = 7e-148 Identities = 343/370 (93%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 1 AAGAGTTCGA-TTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAGCGGTGTTGCAAGA 59 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 195 AAGAGTTTGATTTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGA 254 Query 60 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGACTGCGACGGTAAAGTTCACGGC 119 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 255 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGC 314 Query 120 GCTAATTTCTTGGTCGCTAAGCACACGCGGTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 179 |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 315 GCTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 374 Query 180 ACGCCGTGGAAAGC--CTCGGGACTTCGCCTTGGCCCAACTTTCTCCGTCTGCGATTCAT 237 |||||||||||||| || ||| ||||| |||||||||||||||||||||||||| |||| Sbjct 375 ACGCCGTGGAAAGCTACT-GGG-CTTCGTCTTGGCCCAACTTTCTCCGTCTGCGAGTCAT 432 Query 238 GCGTCGCTCTTAAAAACGCCGGCGGTGG---TGGAAACCGTGTTTCATCGGAGAGTCGAG 294 |||||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| | Sbjct 433 GCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTG 492 Query 295 GTCAGGAGGAGGTTAACAGTTTCGAGTCCGAAGAAGATCGGATCAGAGAAGATGATGGCG 354 |||||||||||||||| |||||||||||||||||||||||||| ||||||||| | || Sbjct 493 GTCAGGAGGAGGTTAATAGTTTCGAGTCCGAAGAAGATCGGATTAGAGAAGATCA---CG 549 Query 355 GTGACGGTGA 364 |||||||||| Sbjct 550 GTGACGGTGA 559 Score = 370 bits (200), Expect = 9e-102 Identities = 239/257 (93%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 363 GAAGCTGAGAATCAAGTTGTTCCGTGGTCTGCGGCGGCGCAACCACCTCCGGTGATGAGT 422 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 657 GAAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAGT 716 Query 423 TCTTCATCTTCTGACTGTGGAAGCGGAGGTTCGGTGACGAAGAGGACGAGGACTAGGGAG 482 ||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| ||| Sbjct 717 TCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAG 776 Query 483 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGCTCTTCTTCAGCTCAAGAGTCA 542 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 777 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAG--C-TCTTCAGCTCAAGGGTCA 833 Query 543 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTGGTTTAACT-A-A 600 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 834 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTTTAACTCACA 893 Query 601 CTCTATCGTATCGTCAG 617 ||||| ||||||||||| Sbjct 894 CTCTACCGTATCGTCAG 910 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29738615024 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5