BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945436
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26410.1 | Symbols: | Uncharacterised conserved protein UCP... 1334 0.0
> AT4G26410.1 | Symbols: | Uncharacterised conserved protein UCP022280
| chr4:13346654-13349016 FORWARD LENGTH=1123
Length=1123
Score = 1334 bits (722), Expect = 0.0
Identities = 796/833 (96%), Gaps = 0/833 (0%)
Strand=Plus/Plus
Query 1 GAGAAAGGCAAATCGGAGACGATGAGCGAAACCGAAGCAGCCGGCGTTACCGATGATTCG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 86 GAGAAAGGCAAATCGGAGACGATGAGCGAAACCGAAGCAACCGGCGTTACCGATGATTCG 145
Query 61 GCTCCAGCGATTGCGACTGAAACTGCTGCTGATGCGACGGAGCATACAGCGATTGGAGTG 120
||||||||||||| ||||||||||| | ||||||||| ||||||||||||||| ||||||
Sbjct 146 GCTCCAGCGATTGAGACTGAAACTGTTTCTGATGCGATGGAGCATACAGCGATCGGAGTG 205
Query 121 GTTGAATCGGTGGAAGGAGCCATAGAAGGAGCAGAGAAATGGGTGGATGATTTCCAACGG 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 206 GTTGAATCGGTGGAAGGAGCCATAGAAGGAGCAGAGAAATGGGTGGGTGATTTGCAACGG 265
Query 181 ACGGTGAAGGAATCGACGGATTCCGCCATGCGCTCTGCTCGTTCCCTCCGTGAAAACTCT 240
|||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||| |||
Sbjct 266 ACGGTGAAGGAATCGAAGGATACCGCAATGCGTTCTGCTCGTTCCCTCCGTGAAAATTCT 325
Query 241 ACCTCTCAGTTCCGCTCTATACAGGATTTCATTCCACATGCTTTGACTCAATATAAGACC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 326 ACCTCTCAGTTCCGCTCTATACAGGATTTCATTCCACATGCTTTGACTCAGTATAAGACC 385
Query 301 TATGAGAATGCTTTCTTCAGTAAAGTAACAGAAGAATTGATATACGCAAAAGAGCATCCG 360
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 386 TATGAGAATGCTTTCTTCAGTAAAGTTACAGACGAATTGATATACGCAAAAGAGCATCCG 445
Query 361 GCTGCTACTGTTGGGATTGGTGTCGCTGCTGGTCTCGTTCTGATGCGAGGCCCAAAAAGA 420
|||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 446 GCTGCTGCTATTGGGATTGGTGTCGCTGCTAGTCTCGTTCTGATGCGAGGCCCAAGAAGA 505
Query 421 TTCTTGTTTCGTCATACACTAGGCCGATTTCAGAGTGAAGAGGCACAGTTCTTGAAAGCT 480
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 506 TTCTTGTTTCGTAATACACTAGGCCGATTTCAGAGCGAAGAGGCACAATTCTTGAAAGCT 565
Query 481 GAGAAGCATGTTCAGGAGTTAAACATGTCTGTAGACTTGATGAAAAAGGAGAGCAGGAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAGAAGCATGTTCAGGAGTTAAACATGTCTGTAGACTTGATGAAAAAGGAGAGCAGGAAA 625
Query 541 TTGCTTGAGAGGACGGCTTTAGCAGAGAAGGATATGAAACGCGGTCTCTCTGAACTCATG 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 626 TTGCTTGAGAGGACGGCTTTAGCAGAGAAGGATATGAAACGTGGTCTCTCTGAGCTCATG 685
Query 601 AACTCTGGAAACGATATACATCGCCTTGCTAAGTCTGTCCACAAGGTTGAATGTGAAGCT 660
||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct 686 AACTCTGGAAACGATATACATCGTCTTGCTAAGTCCGTCCACAAAGCTGAATGTGAAGCT 745
Query 661 GCAGATTTGATGGACGGACTTCGGCAAATTCCTGGAAGGGAAGCTATCAAGCTTAGAGCT 720
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 746 GCTGATTTGATGGACGGACTTCGGCAAATTCCTGGAAGGGATGCTATCAAGCTTAGAGCT 805
Query 721 GAAGTGGCTTCCATGACTTCGCTCTTGAGACAGAAGAGGATTGCATTGAACAAAAGGATC 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 806 GAAGTGGCTTCCATGACTTCGCTTTTGAGACAGAAGAGGATTGCATTGAACAAAAGGATC 865
Query 781 ATGAGTATGTCTGAGCTAGGAGTTCCCGTCTGATATATCCAACACAAACCCAC 833
||| ||||||| || ||||||||| ||||||||||||||||||||||| ||||
Sbjct 866 ATGGGTATGTCGGACCTAGGAGTTTCCGTCTGATATATCCAACACAAATCCAC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5