BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945445
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 584 2e-166
AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class... 418 3e-116
AT4G26290.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 185 3e-46
> AT4G26288.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast
hits to 232 proteins in 41 species: Archae - 0; Bacteria
- 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2;
Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307461-13308953
FORWARD LENGTH=1366
Length=1366
Score = 584 bits (316), Expect = 2e-166
Identities = 457/519 (88%), Gaps = 33/519 (6%)
Strand=Plus/Plus
Query 1 TTGACAAAAGAAGCAGAAGAAATGATCATTCGCGATGGTAATCTGATTTCGACAACAAAA 60
|||||||||| | |||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 145 TTGACAAAAG-A--AGAAGAGATGAACATTCGCGATGGTAATCTTATTTCGACTACAAAA 201
Query 61 GAAGAAG-GTGGTGTTGTAGGAGTTTCAAGATCCTCGGAAAAAGATCCATCTTCATCTTC 119
||||||| | |||||| | ||||||||| ||||||| | ||||| | |||||||||
Sbjct 202 GAAGAAGAG-GGTGTTATTGGAGTTTCAGGATCCTCTGCAAAAG-----T-TTCATCTTC 254
Query 120 ATCGTCTATCTCTATTTATTCATCTGATTTAACAGAGGATG---------------CTTC 164
||| ||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 255 ATCTTCTATCTCTATGTGTTCATCTGATTTAACAGAGGATGCTTCTTCTTCTTCTTCTTC 314
Query 165 TTCTTCTTC-TC--CAAATGGGCCTTTTGACGACCTATCAGACCTAATCTCTCAGCTCCC 221
||||||||| || ||||||||||||| ||||| || || ||||| ||||||||||||||
Sbjct 315 TTCTTCTTCTTCTTCAAATGGGCCTTTCGACGATCTTTCGGACCTCATCTCTCAGCTCCC 374
Query 222 TTTCACCCACGTCAAGAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAGTCATT 281
| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 TATCATTCAGGTCAAGAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAATCATT 434
Query 282 CACATCTCTAGCAAATGTCACAAG-CTTACAGGATCTTGTGAAGAGAGGATCAAGAACGA 340
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 435 CACATCTCTAGCAAATGTCACAAGTCT-ACAGGATCTTGTGAAGAGAGGATCAAGAACGA 493
Query 341 AGTCATGCTGCAAAAGGGATTATTTATATGGACCAAAGGCCACAATCTCCATGAAAGCCA 400
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 494 AGTCATGCTGCAAAAGGGATTATTTCTATGGACCAAAGGCAACAATCTCCATGAAAGCCA 553
Query 401 CAAGAACATCCTCAAGTCATTCCAATTCAAGATTAAC-TTTAAAACCATTTCATGATTCA 459
| ||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 554 CGAGAACATCCTCAAAACATTCAAATTCAAGATTAACCTTTAAA-CCATTTCATGATTCA 612
Query 460 CCAAAATCAGTTCAATGACATGACAAAACAACCTTCTGG 498
|| ||||||||||||||||||||||||||||||||||||
Sbjct 613 CCCAAATCAGTTCAATGACATGACAAAACAACCTTCTGG 651
> AT4G26300.1 | Symbols: emb1027 | Arginyl-tRNA synthetase, class
Ic | chr4:13307977-13313109 REVERSE LENGTH=2352
Length=2352
Score = 418 bits (226), Expect = 3e-116
Identities = 252/264 (95%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 237 GAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAGTCATTCACATCTCTAGCAAA 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2352 GAAAGGAGGACTTTCAAAGTATTATAAAGGCAAATCTCAATCATTCACATCTCTAGCAAA 2293
Query 297 TGTCACAAGCT-TACAGGATCTTGTGAAGAGAGGATCAAGAACGAAGTCATGCTGCAAAA 355
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292 TGTCACAAG-TCTACAGGATCTTGTGAAGAGAGGATCAAGAACGAAGTCATGCTGCAAAA 2234
Query 356 GGGATTATTTATATGGACCAAAGGCCACAATCTCCATGAAAGCCACAAGAACATCCTCAA 415
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2233 GGGATTATTTCTATGGACCAAAGGCAACAATCTCCATGAAAGCCACGAGAACATCCTCAA 2174
Query 416 GTCATTCCAATTCAAGATTAAC-TTTAAAACCATTTCATGATTCACCAAAATCAGTTCAA 474
||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct 2173 AACATTCAAATTCAAGATTAACCTTTAAA-CCATTTCATGATTCACCCAAATCAGTTCAA 2115
Query 475 TGACATGACAAAACAACCTTCTGG 498
||||||||||||||||||||||||
Sbjct 2114 TGACATGACAAAACAACCTTCTGG 2091
> AT4G26290.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr4:13307595-13307822 REVERSE LENGTH=228
Length=228
Score = 185 bits (100), Expect = 3e-46
Identities = 152/175 (87%), Gaps = 11/175 (6%)
Strand=Plus/Minus
Query 1 TTGACAAAAGAAGCAGAAGAAATGATCATTCGCGATGGTAATCTGATTTCGACAACAAAA 60
|||||||||| | |||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 218 TTGACAAAAG-A--AGAAGAGATGAACATTCGCGATGGTAATCTTATTTCGACTACAAAA 162
Query 61 GAAGAAG-GTGGTGTTGTAGGAGTTTCAAGATCCTCGGAAAAAGATCCATCTTCATCTTC 119
||||||| | |||||| | ||||||||| ||||||| | ||||| | |||||||||
Sbjct 161 GAAGAAGAG-GGTGTTATTGGAGTTTCAGGATCCTCTGCAAAAG-----T-TTCATCTTC 109
Query 120 ATCGTCTATCTCTATTTATTCATCTGATTTAACAGAGGATGCTTCTTCTTCTTCT 174
||| ||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 108 ATCTTCTATCTCTATGTGTTCATCTGATTTAACAGAGGATGCTTCTTCTTCTTCT 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5