BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945578
Length=1078
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25170.2 | Symbols: | Uncharacterised conserved protein (UC... 1026 0.0
> AT4G25170.2 | Symbols: | Uncharacterised conserved protein (UCP012943)
| chr4:12909575-12911580 FORWARD LENGTH=1436
Length=1436
Score = 1026 bits (555), Expect = 0.0
Identities = 620/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 428 GGTTTTCGATGCTAGTTCATATTCTCAGCTGGTAAGAGACAAATACGAGTGCTATCCGGA 487
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 621 GGTTTTCGATGCTAGTTCATATTCCCAGCTGGTTAGAGACAAATACGAGTGCTATCCGGA 680
Query 488 AAGTGGTGGTGGAAACCAGAGCCCTATAGCCACAGGGATGGTTCATCAAGTTCCTTCGTT 547
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 681 AAATGGTGGTGGAAACCAGAGCCCTATAGCCACAGGGATGGTTCATCAAGTTCCTTCATT 740
Query 548 TGGGTCGGATTCGGACTGGATGGAGCCTTCAATGCAACTATGCCATTCAAGAACCTTACA 607
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 741 CGGGTCGGATTCGGACTGGATGGAGCCATCAATGCATTTATGCCATTCAAGAACGTTAAA 800
Query 608 GCCTCATGCTTATGATCAGGTTTACAATGCTTTTGACCTACTACGAACCGAACCATCTGT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GCCTCATGCTTATGATCAGGTTTACAATGCTTTTGACCTACTACGAACCGAACCATCTGT 860
Query 668 CCAGAAAATGGTAGTATCATTGTCGTCTGACAAAGCAGTCTGGGAGGCGGTGATGAACAA 727
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 861 CCAGAAAATGGTAGTATCATTGTCGTCTGACAAAGCAGTTTGGGAGGCGGTGATGAACAA 920
Query 728 CAATGTGGTGCGAGAGATTAGGGACTTGTACAACAATGGCATAAGTCAAGATGAGGAGAG 787
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 921 CGATGTGGTGCGAGAGATTAGGGACTTGTACAACAATGGCATAAGTCAAGATGAGGAAAA 980
Query 788 TTCAGAAGACACTCCCG-GGGAGAACAACGCAGCAATGGATTTCATAAAGTGGGTATTTG 846
|||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 981 TTCAGAAGACAC-CCCTAGGGAGAATAACGCAGCAACGGATTTCATAAAGTGGGTATTTG 1039
Query 847 ACAACACAATGGTTAAGGCCACAGAAGTGTTTGTGAAAATAACAAAGGTCGTGACCGAGC 906
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1040 ACAACACAATGGTTAAGGCCACGGAAGTGTTTGTGAAAATAACAAAGGTCGTGACCGAGC 1099
Query 907 TCTTCAACTGTTACAATGGCGATAGTGTTTACAACAAGGGGAAAGATGCCAAATTCAACA 966
||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1100 TCTTCAATTGTTACAATGGTGATGGTGTTAACAACAAGGGGAAAGATGCCAAATTCAACA 1159
Query 967 ATTGGCTCGAGGAAAGGCTGACGACTTCGGTCCTGCTCTCCATCGTGGTTCTGCTGGTCG 1026
||||||||||||||| |||||| |||||||||||||| |||||| | ||| |||||||||
Sbjct 1160 ATTGGCTCGAGGAAAAGCTGACCACTTCGGTCCTGCTATCCATCATCGTTATGCTGGTCG 1219
Query 1027 TGATGGTGTCCCGAGCCTGCAACAAGTCTTGATCGTTTCAAATTAGCCGACA 1078
||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1220 TGATGGTATCCCGAGCCTGCAACTAGTCTTGATCGTTTCAAATTAGCCGACA 1271
Score = 593 bits (321), Expect = 9e-169
Identities = 406/442 (92%), Gaps = 25/442 (6%)
Strand=Plus/Plus
Query 1 ACAATTTGATAGTGA--TCTCTATGTTTGGTGGTGGAAGAGGGCCTATGGGTGGCGGCGG 58
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 144 ACAATTTGATAGTGATCTCTCTATGTTTGGTGGAGGAAGAGGGCCTATGGGTGGCGGCGG 203
Query 59 AGGTATGTTACGCGCCGCCGGTCGTGCGATGACGAGGACCGGCGTAGCCAACGGTGGTAT 118
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 204 AGGTATGTTACGCGCCGCCGGTCGTGCGATGACGAGGACCGGTGTAGCCAACGGTGGTAT 263
Query 119 TCAAGATCCCTTTGCTTCTTCATCATCCTCGTCCACGTCG--T-C-GC-CG----GCCTC 169
||||||||||||||||||||||||||| |||||||||||| | | || | |||||
Sbjct 264 TCAAGATCCCTTTGCTTCTTCATCATCATCGTCCACGTCGTCTCCGGCTGGAAACGCCTC 323
Query 170 TGTTTCGCATGTCCAGAAACAGAGAtcttcttcttcttcttcttctGGGTCGAATAATCT 229
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 324 TGTTTCGCATGTCCAGAAACAGAGA---------TCTTCTTCTTCTGGGTCGAATAATCT 374
Query 230 TACGAT-TTCCGCGGCTTCAGGGTTGTTGTTGAATCTTCCGGTGGCTGCAACCTCCGGAT 288
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GACG-TATTCCGCGGCTTCTGGGTTGTTGTTGAATCTTCCGGTGGCTGCAACCTCCGGAT 433
Query 289 GGAAAGGCGGCG--C-TTTTTCCTTTGTTAATTCCGGAGGTTATGATGATTTTGAGTGGG 345
||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 434 GGAGCGGCGGCGGTCCTTTTTCCTTTGTTAATTCTGGAGGTTATGATGATTTTGAGTGGG 493
Query 346 TTTCTGAGGAAGAAGACGATTCTCTGTTTGGCTCTGTTCCTTCTGTTGATGAAGTCCATG 405
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 494 TTTCTGAGGAAGAAGATGATTCTCTGTTTGGCTCTGTTCCTTCTGTTGATGAAGTCCAAG 553
Query 406 ATGCTGTTTCTGCTCTCCAGCA 427
||||||||||||||||||||||
Sbjct 554 ATGCTGTTTCTGCTCTCCAGCA 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52810973340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5