BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945603

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24960.1 | Symbols: ATHVA22D, HVA22D | HVA22 homologue D | c...   688    0.0  


> AT4G24960.1 | Symbols: ATHVA22D, HVA22D | HVA22 homologue D | 
chr4:12827937-12829243 FORWARD LENGTH=792
Length=792

 Score =  688 bits (372),  Expect = 0.0
 Identities = 426/452 (94%), Gaps = 4/452 (1%)
 Strand=Plus/Plus

Query  3    TTGCAAAGGAAGaaaaa-aaTGGACAACAAATTTTGGACTTTCCTCACTGCTCTTCATTC  61
            ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||
Sbjct  105  TTGCAAAGGAAGAAAAACAATGG---ACAAATTTTGGACTTTCCTCACTGCTCTTCATTC  161

Query  62   AGGCGCTGGGCCCATAGTGATGTTGCTGTATCCATTGTACGCATCGGTGATAGCAATGGA  121
            |||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct  162  AGGCGCTGGGCCTATCGTGATGTTACTTTATCCATTGTACGCATCGGTGATAGCAATGGA  221

Query  122  GAGCACAACAAAAGTTGACGATGAACAGTGGCTCGCGTACTGGATAATATACTCCTTCCT  181
            ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct  222  GAGCACAACAAAAGTGGACGATGAACAGTGGCTTGCGTATTGGATAATATATTCGTTCCT  281

Query  182  TTCACTCACGGAACTGATTCTGCAATCGCTTATTGAGTGGATTCCGATTTGGTATACGGT  241
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  282  CTCACTCACGGAACTGATTCTGCAATCGCTTATTGAGTGGATTCCGATTTGGTATACGGT  341

Query  242  GAAACTTGTGTTCGTGGCTTGGCTTGTTCTGCCGCAGTTTCAAGGCGCAGCTTTTATCTA  301
            |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct  342  GAAACTTGTGTTCGTGGCTTGGCTAGTTCTTCCTCAGTTTCAAGGCGCAGCTTTTATCTA  401

Query  302  CAACCGTGTGGTTAGAGAACAGTTCAAGAAACACGGCGTCCTCCGCTCCTCCCACTCCAA  361
            ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  402  CAACCGTGTTGTTAGAGAACAGTTCAAGAAACACGGCGTCCTCCGCTCCACCCACTCCAA  461

Query  362  GGCCACCAAGCCCAATATCCTCCAGTCCATTTTCCCCAACCGGGAGGGACAGGAGGCTCA  421
            | ||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct  462  GCCCACCAAGCCCAACATCCTCCACTCCATTTTCCCCCACCGGGAGGGACACGAGGCTCA  521

Query  422  CAGTCACTGAATCAGAAGAGAGGAGCAGACAG  453
            |||||||||||||||||| | |||||||||||
Sbjct  522  CAGTCACTGAATCAGAAGGGTGGAGCAGACAG  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5