BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945606 Length=721 Score E Sequences producing significant alignments: (Bits) Value AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, c... 1066 0.0 > AT4G24930.1 | Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092 Length=1092 Score = 1066 bits (577), Expect = 0.0 Identities = 661/702 (94%), Gaps = 4/702 (1%) Strand=Plus/Plus Query 1 GTAACCCATAAACTAGAAACATGAGTTTGGTCGGCAGTTTACAACTCATCCTCCCGCCAC 60 |||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 123 GTAA-CCATAAACTACAAACATGAGTTTGGTCGCCAGTTTGCAACTCATCCTCCCGCCAC 181 Query 61 GGCCGAGAAGCACCAAGTTCTTGTGCTCAATGAAAAGCCCAACACAAGGACAAGAAGACc 120 ||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||| | | | Sbjct 182 GGCCGAGAAGCACCAAGTTGTTGTGCTCATTGCAAAGCCCAAAACAAGAACAAG-A-A-C 238 Query 121 tctcttcttcttctccttcaatctctctcttgccaaaactaatctcgtttgctcttgctc 180 |||||||| |||||||| |||||||||| || |||||||||||||| |||||||||||| Sbjct 239 TCTCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTA 298 Query 181 tctctcttacatcctcttcccctgccttagccattccttctctctcctcttctcAGCCAC 240 ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TCTCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 358 Query 241 TCACTACTCCTTTCACCCAATCCAAGTTTGTGCAGACTGGTCTTCTCAATGGCAAAATTA 300 |||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 359 TCACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTA 418 Query 301 GACCTTGCCCTTCCACGAACCCAGGCTGTGTATCCACGAATCCGACCTCATCTTCCTTCT 360 | ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 419 GGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCT 478 Query 361 CATTTCCATTGACGATCCCAGAAACTGATACACAAGATCCCATTCAGAAACTGAAAGAAG 420 | ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| Sbjct 479 CTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATTGAGAAACTGAAAGAAG 538 Query 421 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCATACGGGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 539 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCCTATGGGA 598 Query 481 GATATTTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 540 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GGTATGTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 658 Query 541 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 718 Query 601 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGATGAAGAAGCTCATCGACC 660 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 719 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGTTGAAGAAGCTCATCGATC 778 Query 661 AGCTTGGTTGGTATGCTCCTACCTTTGAATCCATGGAGTAAA 702 ||||||||||||||||||||||||||||||| ||||| |||| Sbjct 779 AGCTTGGTTGGTATGCTCCTACCTTTGAATCTATGGAATAAA 820 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34962966312 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5