BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg945657

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24440.1 | Symbols:  | transcription initiation factor IIA g...   617    2e-176


> AT4G24440.1 | Symbols:  | transcription initiation factor IIA 
gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633180-12634760 
FORWARD LENGTH=696
Length=696

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 353/362 (98%), Gaps = 1/362 (0%)
 Strand=Plus/Plus

Query  2    AGATC-TTTGGGAAGTATAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG  60
            ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  AGATCGTTGGGGAAGTAGAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG  207

Query  61   ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208  ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA  267

Query  121  GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG  327

Query  181  AAGACCAAGGTGTCTATCAAGGGGCACCTGCACACTTACAGGTTCTGTGACAACGTCTGG  240
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  328  AAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGG  387

Query  241  ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  388  ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG  447

Query  301  GTGAAGATAGTGGCATGTGATTCTAAGCTGCTCACACAGTGAGATGCAAATTCTCAGCAG  360
            ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct  448  GTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGAGATGCAAATTGTCTGCAG  507

Query  361  GG  362
            ||
Sbjct  508  GG  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5