BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945657 Length=362 Score E Sequences producing significant alignments: (Bits) Value AT4G24440.1 | Symbols: | transcription initiation factor IIA g... 617 2e-176 > AT4G24440.1 | Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633180-12634760 FORWARD LENGTH=696 Length=696 Score = 617 bits (334), Expect = 2e-176 Identities = 353/362 (98%), Gaps = 1/362 (0%) Strand=Plus/Plus Query 2 AGATC-TTTGGGAAGTATAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG 60 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 148 AGATCGTTGGGGAAGTAGAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG 207 Query 61 ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA 267 Query 121 GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG 327 Query 181 AAGACCAAGGTGTCTATCAAGGGGCACCTGCACACTTACAGGTTCTGTGACAACGTCTGG 240 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 328 AAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGG 387 Query 241 ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 388 ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG 447 Query 301 GTGAAGATAGTGGCATGTGATTCTAAGCTGCTCACACAGTGAGATGCAAATTCTCAGCAG 360 ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| Sbjct 448 GTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGAGATGCAAATTGTCTGCAG 507 Query 361 GG 362 || Sbjct 508 GG 509 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16990499162 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5