BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945747
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23630.1 | Symbols: BTI1, RTNLB1 | VIRB2-interacting protein... 1373 0.0
AT4G11220.1 | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein... 680 0.0
> AT4G23630.1 | Symbols: BTI1, RTNLB1 | VIRB2-interacting protein
1 | chr4:12317059-12319937 FORWARD LENGTH=1790
Length=1790
Score = 1373 bits (743), Expect = 0.0
Identities = 835/876 (95%), Gaps = 20/876 (2%)
Strand=Plus/Plus
Query 1 AAGATC-TTGCG-TTTGAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGC 58
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 578 AAGATCTTTGCGTTTTGAAACGATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGC 637
Query 59 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAA 112
|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 638 TCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAA 697
Query 113 GATCCATCACGGTGGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAA 172
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 698 GATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAA 757
Query 173 GAAGAAGACTAAGAAGCCGTCTTCTCCTTCG---TCTATGAAATCGAAAGTTTACCGCTT 229
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 758 GAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTT 817
Query 230 GTTCGGTA-GAGAGCAGCCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATAT 288
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 818 GTTCGG-ACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATAT 876
Query 289 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGG 936
Query 349 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTG 996
Query 409 TTCTTGCTGTGCTGTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAA 468
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 997 TTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAA 1056
Query 469 AGATTCCTGAAGTTCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 528
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1057 AGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAA 1116
Query 529 TCGAGATCAACCGTGGATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGA 588
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1117 TCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGA 1176
Query 589 AATTCCTCATTGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCTTCAACT 648
|||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1177 AATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACT 1236
Query 649 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTATGACA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1237 TCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACA 1296
Query 709 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCGGTGATCGAGCTCAAAAAGCAGT 768
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1297 AGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGT 1356
Query 769 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACT-GGGCCCATTGAAGAACAAG 827
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1357 ATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCG-TTGAAGAACAAG 1415
Query 828 AAGAAAGATTAGG--TTTACACT-GCTGTTGTCCGT 860
||||||||||||| ||||||| | |||||||||
Sbjct 1416 AAGAAAGATTAGGGGTTTACACAAG--GTTGTCCGT 1449
> AT4G11220.1 | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein
2 | chr4:6837911-6839795 REVERSE LENGTH=1298
Length=1298
Score = 680 bits (368), Expect = 0.0
Identities = 699/852 (82%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 15 GAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGCT--CCT-GAGCCAGCT 71
||||| |||||||| ||||||||||||||||||||| | | | || | || |||||
Sbjct 212 GAAACAATGGCGGATGAACATAAGCATGAAGAATCT-TCA-C-CTAATTTGGATCCAGCA 268
Query 72 GTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAAGATCCATCACGGT 125
|| |||||||| ||||| ||| | |||| ||| ||||||||||||||||||||
Sbjct 269 GTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAAA 328
Query 126 GGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAG 185
||||| ||| ||||| || ||||| || ||||| ||| || | |||||||| ||
Sbjct 329 GGTGA---TTCGTCGTCTTCATCATCATCAGATGACGAAAAC--G-AGAAGAAGTCT--- 379
Query 186 AAGCCGTCTTCTCCTTCGTCTATGAAATCGAAAGTTTACCGCTTGTTCGGTAGAGAGCAG 245
| | || ||||| |||| |||||||||| ||||| || |||||||| |||||| ||
Sbjct 380 TCGTCATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAG-AG 438
Query 246 -CCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAA 304
||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| ||||
Sbjct 439 ACCTGTTCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAA 498
Query 305 GAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCT-GCTTGGGTTG-TGTTTGAATTG 362
||| ||||| || |||||| |||| |||||||||| | || |||| || | |||||||||
Sbjct 499 GAAAATGTCAGGAGGTGTATTTGGCGGTGCTACAG-TGGCATGGG-TGCTATTTGAATTG 556
Query 363 ATGGAGTACCATCTTCTCACTCTGCTT-TGCCACGTGATGATTGTTGTTCTTGCTGTGCT 421
|||||||| |||||||| |||||| || || ||||| ||||| |||| |||||||||| |
Sbjct 557 ATGGAGTATCATCTTCTTACTCTG-TTATGTCACGTTATGATCGTTGCTCTTGCTGTGTT 615
Query 422 GTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAAAGATTCCTGAAGT 481
|||| | |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 616 GTTTCTATGGTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGT 675
Query 482 TCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGG-CTCAGAATCGAGATCAACC 540
||||||||||||||| ||| ||||||||||||| || ||| || |||||||| |||||||
Sbjct 676 TCATATCCCTGAAGAACCTCTTCTTCAGCTTGCTTC-GGGTCTTAGAATCGAAATCAACC 734
Query 541 GTGG-ATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGAAATTCCTCAT- 598
|||| || ||||||||||||||| ||||| || || |||||| ||||||| |||||| |
Sbjct 735 GTGGGAT-CTCTTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTC-TC 792
Query 599 TGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCT-TCAACTTCTTGACAT 657
|||||||||||| |||||||||||||| |||||||| || |||| | | ||||||||||
Sbjct 793 TGCTATTGCCGGATTGTGGGTTCTATCGATCTTGGGCGGCTGCTAT-AGTTTCTTGACAT 851
Query 658 TGGCATACATAGCTCTTGTGT-TGCTCTTCACGGTTCCTCTTGCCTATGACAAGTATGAA 716
|||||||||||||||| || | |||||||||| ||||||||| ||| |||||||| |||
Sbjct 852 TGGCATACATAGCTCTGGT-TCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAA 910
Query 717 GACAAAGTCGACCCATTA-GGTGAGAAAGCGGTGA-TCGAGCTCAAAAAGCAGTATGCAG 774
|||||||| ||| ||| | ||||||||||| || | ||| | || ||||| || || |
Sbjct 911 GACAAAGTAGACTCAT-ACGGTGAGAAAGCAATGGCT-GAGTTGAAGAAGCAATACGCTG 968
Query 775 TGTTGGATG-AGAAGGTGTTGAGCAAGATCCCACTG-GGCCCATTGAA-GAACAAGAAGA 831
||||||| | | ||||| || ||||| |||||| | || || ||||| || ||||||||
Sbjct 969 TGTTGGACGCA-AAGGTATTCAGCAAAATCCCAA-GAGGACCGTTGAAAGA-CAAGAAGA 1025
Query 832 AAGATTAGGTTT 843
| |||||| |||
Sbjct 1026 AGGATTAGTTTT 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5