BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg945850 Length=1115 Score E Sequences producing significant alignments: (Bits) Value AT4G22740.1 | Symbols: | glycine-rich protein | chr4:11943849-... 1515 0.0 > AT4G22740.1 | Symbols: | glycine-rich protein | chr4:11943849-11945897 REVERSE LENGTH=1318 Length=1318 Score = 1515 bits (820), Expect = 0.0 Identities = 1019/1114 (91%), Gaps = 18/1114 (2%) Strand=Plus/Plus Query 10 TTTATCA-GGAAGATGCAAGGA---ggtggtagagatccttttggtggtggttttggtgg 65 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 34 TTTATCAGGGAAGATGCAAGGAGGTGGTGGTAGAGATCCTTTTGGTGGTGGTTTTGGGGG 93 Query 66 tccttttggtggttttggaggcggctcttttggtcgttttgg-agtcggttcctttggtg 124 ||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||| Sbjct 94 TCCTTTTGGTGGTTTTGGAGGTGGCTCTTTTGGTGGTTTTGGAAG-AGGTTCCTTTGGTG 152 Query 125 gttttggtggCCCTAATCGTCCTCCAAATTTGATGGCTAATTTTTTCGGAGGAAGAGATC 184 | ||||||||||||||| ||||||| | | | ||| |||||||||||||||||||||||| Sbjct 153 GATTTGGTGGCCCTAATGGTCCTCCGAGTCTCATGTCTAATTTTTTCGGAGGAAGAGATC 212 Query 185 CGTTTGATGACCCTTTTTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAGTCCAACTTCT 244 | ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 213 CATTTGACGACCCTTTCTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAATCCAACTTCT 272 Query 245 TTGGTCCTAGCATGAATCCTTTTGCGGAAATGCGTCGTCTTCCCCCGGGTTTTATTGAGA 304 ||||||| ||||||||||||||||| ||||||| |||||| || | |||||||||||||| Sbjct 273 TTGGTCCCAGCATGAATCCTTTTGCAGAAATGCATCGTCTGCCACAGGGTTTTATTGAGA 332 Query 305 ATAATCAGCCACCAGGACCGAGTAGATCACGCGGACCGGTTATtgaagagattgaatcag 364 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 333 ATAATCAGCCTCCAGGACCGAGTAGATCACGCGGACCGGTTATTGAAGAGATTGATTCAG 392 Query 365 atgatgagaaagaaggagaaggtgataaagagaagaaaggaagaCTAGGGAAACATGGCA 424 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 393 ATGATGAGAAAGAAGGAGAAGGTGATAAAGAGAAGAAAGGAAGTCTAGGGAAACATGGCA 452 Query 425 GGTCAAGCAGTGAGGTTGAAGCTGAAGATTTATTTAACG-GAAGGAAATCGTTTGTTTCT 483 ||||||||||||||| |||| ||||||| | | | | | | || | | | | Sbjct 453 GGTCAAGCAGTGAGGCTGAAACTGAAGA-TGCTAGAGTGCG-A-GAGA--G-AAGAAAC- 505 Query 484 TTGG-AACTG-ATTGTGTTTTATGTAAATGCAGAGAGAAGGAACCGACAAATGCAAAACA 541 || || || | | | |||||||||||||||||||||||||| ||||||| |||| Sbjct 506 -CGGCAAATGCAAAG-CATGAATGTAAATGCAGAGAGAAGGAACCGAGAAATGCAGAACA 563 Query 542 TGAATGTAAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCCATGG 601 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 564 TGAATGTGAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCTATGG 623 Query 602 TGAACAATGGACAGTGGCAACCTCAAACTGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 661 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 624 TGAACAATGGACAGTGGCAACCTCAAACCGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 683 Query 662 CATACGGTGGTCAGAACGGCAACTACTATACTTCATCGAAGACCAGAAGGACAGGAAGTG 721 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 684 CATACGGTGGTCAGAACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTG 743 Query 722 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAGGCAGCGCATA 781 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 744 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATA 803 Query 782 GGATTTCAAGGGGCCTTCATAACAAGGGCCACACGGTTGCGCGTAATCTTAACTCAGATG 841 ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 804 TGATTTCAAGAGGCCTTCATAACAAGGGCCACACAGTTGCGCGTAAACTTAACTCAGATG 863 Query 842 GCCGTGTTGATACAACACAGACCTTGCACAATTTAAATGAAGATGAATTGGCCACCTTTG 901 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 864 GCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGATGAATTGGCTGGTTTTG 923 Query 902 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAGATGCAATTACCCGGTCGGTCTGGTTCAT 961 ||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||| Sbjct 924 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCAT 983 Query 962 TTGGAAGTGGTCTTGTAAACAGAGAGCAACCAATGTTGCTTCCCTCGACTGATCCAAGTC 1021 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 984 TTGGAAGTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAAGTC 1043 Query 1022 CTTCTCATGCCCGAGCAGAGTCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1081 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1044 CTTCTCATGCACGAGCAGAATCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1103 Query 1082 ATGGTAGAAACTAATCTCTGACGACATGTATGGT 1115 |||||| ||||||||||| | | | ||||||||| Sbjct 1104 ATGGTACAAACTAATCTCCGCCTATATGTATGGT 1137 Score = 128 bits (69), Expect = 1e-28 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 510 TGC-AGAGAGAAGGAACCGACAAATGCAAAACATGAATGTAAATGCAGAGAGAAGGAACC 568 ||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 489 TGCGAGAGAGAAGAAACCGGCAAATGCAAAGCATGAATGTAAATGCAGAGAGAAGGAACC 548 Query 569 CACAAATGCAGAACATGAATGTGAATGC 596 | ||||||||||||||||||||||||| Sbjct 549 GAGAAATGCAGAACATGAATGTGAATGC 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54668393505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5