BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg945904
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22240.1 | Symbols: | Plastid-lipid associated protein PAP ... 1450 0.0
AT4G04020.1 | Symbols: FIB | fibrillin | chr4:1932144-1933950 F... 654 0.0
> AT4G22240.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr4:11765803-11767304 REVERSE
LENGTH=1297
Length=1297
Score = 1450 bits (785), Expect = 0.0
Identities = 904/961 (94%), Gaps = 10/961 (1%)
Strand=Plus/Plus
Query 16 aaaaaaaaaTGGCGACGGTACAATTGTTCACCCAATTTCCCTGCCAAACCAGATTTTCAA 75
||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 70 AAAAAAAAATGGCGACGGTACAATTGTCCACCCAATTTAGCTGCCAAACCAGAGTTTCAA 129
Query 76 TCACACGGAACTCTAAATCTATCTCCAAGCCTCCGATTCTGGTACCGATAAGCTCAATTA 135
|| ||| |||||||||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 130 TCTCACCGAACTCTAAATCTATCTCCAAGCCTCCGTTTCTGGTACCGGTGACCTCAATTA 189
Query 136 TTCACCGTCCGGTGTTCTCCACCAGAAGAATCGGTGTTT-CCCGTGCGGA-TTTT-AGAG 192
||||||| ||| || |||||||| || |||||| ||||| ||| | || |||| | ||
Sbjct 190 TTCACCGCCCGATGATCTCCACCGGAGGAATCGCTGTTTCCCCCCGTAGAGTTTTCAAAG 249
Query 193 TCCGAGCCACAGATGCGGCGGGGGAGAGAGGATCAGCTCTATTGGCGGCGGAGGAAGCCA 252
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct 250 TCCGAGCCACAGAT---ACGGGAGAGATAGGATCAGCTCTATTGGCGGCGGAGGAAGCAA 306
Query 253 TTGAAG-CTGTGGAGGAGACAGAGCGGCTTAAGAGATCGCTCGCGGATTCGTTGTACGGA 311
|||||| | ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 307 TTGAAGAC-GTGGAAGAGACGGAGCGGCTAAAGAGATCGCTCGTGGATTCGTTGTACGGA 365
Query 312 ACAGATCGAGGATTGAA-CGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTAATCAC 370
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ACAGATCGAGG-TTTAAGCGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTAATCAC 424
Query 371 ACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGG 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGG 484
Query 431 CAAATGGATTCTCGCGTACACATCGTTCGTGAATTTGTTCCCGTTGCTTTCACGAGGAAT 490
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 485 CAAATGGATCCTCGCCTACACATCGTTCGTGAATTTGTTCCCGTTGCTATCACGAGGAAT 544
Query 491 CGTGCCATTAGTAAAAGTAGATGAGATCTCACAGACCATTGATTCAGAAAACTTCACAGT 550
||| || ||| ||||||| ||||||||||| || |||||||||||||| |||||||| ||
Sbjct 545 CGTACCGTTAATAAAAGTCGATGAGATCTCTCAAACCATTGATTCAGATAACTTCACCGT 604
Query 551 CCAGAACTCCGTTCGTTTCGCTGGTCCTCTAGGTACAAACTCGATTAGCACCAACGCTAA 610
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 605 CCAGAACTCTGTTCGTTTCGCTGGTCCTTTAGGTACAAACTCGATTAGCACCAACGCTAA 664
Query 611 ATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGTAATTGGGAC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 ATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGTAATTGGGAC 724
Query 671 GCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGGTCAAAAGAT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGGTCAAAAGAT 784
Query 731 AGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGATACAGCCTCGTCTGTGGC 790
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 TGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGACACAGCCTCGTCTGTGGC 844
Query 791 TAGAACCATATCAAGCCAACCACCATTGAAATTCTCTTTGCCGGGGGACAATGCGCAGTC 850
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 845 TAGAACCATATCAAGCCAACCACCGTTGAAATTCTCTTTGCCGGCGGACAATGCGCAGTC 904
Query 851 TTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGAGACGGTGGAAG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGAGACGGTGGAAG 964
Query 911 TGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTTGAACTTGGTCAAAATA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTTGAACTTGGTCAAAATA 1024
Query 971 T 971
|
Sbjct 1025 T 1025
> AT4G04020.1 | Symbols: FIB | fibrillin | chr4:1932144-1933950
FORWARD LENGTH=1378
Length=1378
Score = 654 bits (354), Expect = 0.0
Identities = 597/715 (83%), Gaps = 14/715 (2%)
Strand=Plus/Plus
Query 247 AAGCCATTGAAGCTGTGGAGGAGACAGAGCGGCTTAAGAGATCGCTCGCGGATTCGTTGT 306
|||| || ||| | ||||||||||| ||| |||| |||||||| || |||||||||||||
Sbjct 265 AAGCAATCGAATCCGTGGAGGAGACGGAGAGGCTAAAGAGATCACTAGCGGATTCGTTGT 324
Query 307 ACGGAACAGATCGAGGATTGAA-CGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTA 365
|||||||||||||||| || || || |||||| || || |||||||| ||| | || ||
Sbjct 325 ACGGAACAGATCGAGG-TTTAAGCGTATCGAGTGATACGAGAGCTGAGATCAGCGAGCTC 383
Query 366 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGA-CGGAAGCTCT-TTTCCTTC 423
|||||||||||||||||||||||||||||||||||||| | || ||||||| |||| | |
Sbjct 384 ATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACG-AAGCTCTGTTTC-TCC 441
Query 424 TCAACGGCAAATGGATTCTCGCGTACACATCGTTCGTGAATTTGTTCCCGTTGCTTTCAC 483
|||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||| ||||
Sbjct 442 TCAACGGCAAATGGATCCTCGCCTACACGTCGTTCGTGGGGTTGTTCCCATTGCTCTCAC 501
Query 484 GAGGAATCGTGCCATTAGTAAAAGTAGATGAGATCTCACAGACCATTGATTCAGAAAACT 543
|| |||| | || || || ||||| |||||||||||||| ||||||||||| || | ||
Sbjct 502 GAAGAATTGAACCGTTGGTTAAAGTGGATGAGATCTCACAAACCATTGATTCCGATAGCT 561
Query 544 TCACAGTCCAGAACTCCGTTCGTTTCGCTGGTCC-TCTAGGTACAAAC-TCGATTAGCAC 601
|||| || || ||||| || || ||||||||||| | | |||| | ||| |||||||
Sbjct 562 TCACCGTTCAAAACTCTGTCCGGTTCGCTGGTCCGTTTTCC-ACAA-CGTCGTTTAGCAC 619
Query 602 CAACGCTAAATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGT 661
||||||||| || ||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 620 CAACGCTAAGTTTGAAATCCGAAGTCCTAAACGTGTCCAGATTAAGTTCGAGCAAGGTGT 679
Query 662 AATTGGGACGCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGG 721
|| ||||| ||||||||||||||||| ||||| |||||||||| || |||||||||||
Sbjct 680 TATAGGGACTCCTCAGCTAACGGATTCGATTGAAATACCGGAATCCGTGGAGGTTCTTGG 739
Query 722 TCA-AAAGATAGATCTTAA-CCCGATCAGAGGGTTACTTACCTCGGTGCAAGATACAGCC 779
||| ||| || ||||| || ||| || | ||| |||||||| || || ||||| || ||
Sbjct 740 TCAGAAA-ATCGATCTCAATCCC-ATTAAAGGTTTACTTACATCAGTCCAAGACACTGCT 797
Query 780 TCGTCTGTGGCTAGAACCATATCAAGCCAACCACCATTGAAATTCTCTTTGCCGGGGGAC 839
|| || |||||||||||||| |||| ||||||||||||||| || ||| |||| | |||
Sbjct 798 TCTTCAGTGGCTAGAACCATTTCAAACCAACCACCATTGAAGTTTTCTCTGCCTAGTGAC 857
Query 840 AATGCGCAGTCTTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGA 899
|| ||||||| ||||| ||||| |||||||| ||||| ||| |||||||||| |||||
Sbjct 858 AACACGCAGTCGTGGCTGCTCACAACTTATCTCGACAAGGACCTTCGGATCTCGAGAGGC 917
Query 900 GACGGTGGAAGTGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTT 954
|| |||||||| |||| |||||| ||||||||||||||| ||||||| || ||||
Sbjct 918 GATGGTGGAAGCGTCTATGTGCTCATCAAAGAAGGAAGCTCTCTCTTAAACCCTT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5