BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946015
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21660.2 | Symbols: | proline-rich spliceosome-associated (... 1836 0.0
AT1G11520.1 | Symbols: | pliceosome associated protein-related... 453 3e-126
> AT4G21660.2 | Symbols: | proline-rich spliceosome-associated
(PSP) family protein | chr4:11506014-11509842 REVERSE LENGTH=2112
Length=2112
Score = 1836 bits (994), Expect = 0.0
Identities = 1085/1130 (96%), Gaps = 2/1130 (0%)
Strand=Plus/Plus
Query 667 GGAAAACGTGGTATAGAGAAGCAGCCATTTCATCTTCCTGATTTCATTGCTGCAACTGGA 726
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 758 GGAAAGCGTGGGATAGAGAAGCAGCCATTTCATCTTCCTGATTTCATTGCTGCAACCGGA 817
Query 727 ATTGAGAAAATTAGACAGGCTTACATTGAGAAAGAAGATGGTAAGAAGTTGAAGCAAAAG 786
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 818 ATTGAGAAGATTAGACAGGCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAG 877
Query 787 CAACGGGAGCGAATGCAACCAAAGATGGGAAAGATGGACATTGACTACCAGGTCCTTCAT 846
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 878 CAACGGGAGAGAATGCAACCAAAAATGGGAAAGATGGACATTGACTACCAGGTACTTCAT 937
Query 847 GATGCATTTTTCAAATACCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GATGCATTTTTCAAATACCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTT 997
Query 907 GAAGGGAAAGAATTTGAGGTTAAACTGAGGGAAACGAAACCAGGGCTTTTATCACACGAC 966
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 998 GAAGGGAAAGAATTTGAGGTTAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGAC 1057
Query 967 TTAAAAGAAGCTCTTGGTATGCCTGAAGGCGCTCCTCCCCCATGGCTAATTAATATGCAG 1026
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1058 TTAAAAGAAGCTCTTGGTATGCCTGAAGGCGCTCCTCCCCCATGGCTGATTAACATGCAG 1117
Query 1027 AGATATGGTCCTCCTCCTTCTTACCCACACCTGAAAATTCCTGGTTTGAATGCTCCTATT 1086
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1118 AGATATGGTCCGCCTCCTTCTTACCCACATCTGAAAATTCCTGGTTTGAATGCTCCTATT 1177
Query 1087 CCACTTGGAGCTAGCTTTGGGTATCATGCTGGCGGCTGGGGGAAACCTCCAGTTGACGAA 1146
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1178 CCAATTGGAGCTAGCTTTGGTTTTCATGCTGGCGGCTGGGGGAAACCTCCAGTTGACGAA 1237
Query 1147 TATGGGCGTCCATTGTATGGAGATGTCTTTGGTGTCCAGCAACAAGATCAGCCTAACTAT 1206
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1238 TATGGGCGTCCATTGTATGGAGATGTTTTTGGTGTCCAGCAACAAGATCAGCCTAACTAC 1297
Query 1207 GAGGAGGAGCCTATTGATAAGAGTAAGCACTGGGGTGATTTagaggaagaggaagaggaa 1266
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1298 GAGGAGGAGCCAATTGATAAGAGCAAGCACTGGGGTGATTTAGAGGAAGAGGAAGAAGAA 1357
Query 1267 gaggaggaggaagaagaggaacaagaagaggagatggatgaagaggaTCTACAAGATGGC 1326
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 1358 GAGGAGGAGGAAGAAGAGGAACAAGAAGAGGAGATGGATGAAGAGGAACTAGAAGACGGC 1417
Query 1327 ACTGAATCTGTTGATACACTGTCAAGCACTCCTACTGGTATTGAGACACCAGATGCAATT 1386
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1418 ACTGAATCTGTTGATACACTGTCAAGCACTCCTACTGGTATAGAGACACCGGATGCAATT 1477
Query 1387 GAACTTCGTAAGGAACAGAGAAAGGAACCCGATAGGCCTCTATACCAGGTACTCGAAGAA 1446
|||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 1478 GAACTTCGTAAGGATCAGAGAAAGGAACCTGATAGGGCTCTATACCAGGTACTCGAGGAA 1537
Query 1447 AAGGGAGAGAGTGTTGCTCCTGGAACAGTGCTGGGAACCACACACACATACGTTATTAAG 1506
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1538 AAGGGAGAGAGTGTTGCTCCTGGAACATTGCTGGGAACCTCACACACATACGTTATTAAG 1597
Query 1507 ACTGGTACTCAAGACAAGACGGGAGCCAAAAGGGTTGATTTGCTGAGAGGGCAAAAGACA 1566
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1598 ACTGGTACTCAAGAAAAGACGGGAGCCAAAAGGGTTGATTTGCTGAGAGGGCAGAAGACA 1657
Query 1567 GACAGAGTGGATGTCAGTTTACAGCCAGAAGAGCTGGATGCTATGGAAAATGTGTTACCT 1626
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1658 GACAGAGTGGATGTCAGCTTACAGCCAGAAGAGCTGGATGCTATGGAAAATGTTTTACCT 1717
Query 1627 GCCAAGTATGAGGAGGCAAGAGAAGAAGAGAAATTGCGCAATAAGCCAGAGGACTTGAGT 1686
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1718 GCCAAGTATGAGGAGGCAAGAGAAGAGGAGAAATTGCGCAATAAGCCAGTGGACTTGAGT 1777
Query 1687 GACATGGTCGTCGAGCATGTGCAGCAGAATAGCAGGAAGAGGAAAATGCATGATAAGGAA 1746
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1778 GACATGGTCGTCGAGCATGTGCAGCAGAATAGTAGGAAGAGGAAAATGCATGACAAGGAA 1837
Query 1747 GGGAAGAAGAAGAAAGATTTCAAATTCTGAGGTGTGTTATGGAAGAGACA 1796
||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1838 GGGAAGAAGAAGAAAGATTTCAAATTCTGAGGTGT-TC-TGGAAGAGACA 1885
Score = 974 bits (527), Expect = 0.0
Identities = 624/671 (93%), Gaps = 6/671 (1%)
Strand=Plus/Plus
Query 1 GATTCTGAGACTTCACCGAATATGACCGCCGATTCAGCCGTCGCACACGTTAATAGCGTC 60
||||| |||| ||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 50 GATTCAGAGAGAACACCGAATATGACCGCCGATTCAACCGTCGCACTCGTTCATAGCGTC 109
Query 61 GTTTCTAACGGCGATGTCTCCAACGGAAACACCACCGCTTCCT-TGAAGAAATCTCGTGA 119
||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 110 GTTTCTAACGGTGATGTCTCCAACGGAAACACCTCCGCTTCCTCT-AAGAAATCTCGTGA 168
Query 120 GAGCGACCGTCGCCGCCGCCGACGGAAGCAGAAGAAGAACAACAAATCATCTCAGGCCGA 179
|| ||||||||||||||| |||||||||||||||||||||||||| |||| || |||||
Sbjct 169 GATTGACCGTCGCCGCCGCAGACGGAAGCAGAAGAAGAACAACAAAGCATCCCAAGCCGA 228
Query 180 TGTAGATACATCGGACGTTTCTGGTGCTTCTGATTCTAAGGAGAATACAGATCCGCAGCA 239
||||||| ||||||||||||||| ||||||||| || || |||||||||||||| ||||
Sbjct 229 TGTAGATGCATCGGACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCC 288
Query 240 ACAGGTTTCTGAGCAGATTGTGATTGAGTATGTTCCAGAGCAGGCTGAATTTGAAGATGG 299
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 289 ACAGGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAGATGG 348
Query 300 TTTTAACGATGAGTTTAAGGAAATCTTTGAGAAGTTCAACTTCCGGGAACC-CATTGCCT 358
||||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||
Sbjct 349 TTTTAACGATGAGTTTAAGGAAATCTTCGAGAAGTTCAACTTCCGCGAACCTC-TTGCCT 407
Query 359 CTGAGGAAGACGGTAAGAAGGATGAGTCTGAGGAGAAAGAAGATGTCAAAAAGAAGGTTA 418
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CTGAAGAAGACGGTACGAAAGATGAGTCTGAGGAGAAAGAAGATGTCAAAAAGAAGGTTA 467
Query 419 ACTCTGATT-TAGATTCAGACGATGAAGAGCAGGATAACCAGAACAAAGAGAAAGGCATC 477
||||||||| | ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 468 ACTCTGATTCT-GATTCAGACGACGACGAGCAGGATAATCAGAACAAAGAGAAAGGCATC 526
Query 478 TCTAATAAGAAGAAAAAGCTTCAACGGAGGATGAAGATTGCTGAGCTGAAGCAGGTTTCC 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 527 TCTAATAAGAAGAAAAAGCTTCAACGGAGAATGAAGATTGCTGAGCTGAAGCAGGTTTCC 586
Query 538 GCTAGGCCTGATGTCGTTGAGGTCTGGGACGCTACTTCAGCAGATCCAAAGTTGTTGGTG 597
|||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 587 GCTAGGCCTGATGTTGTTGAGGTCTGGGACGCGACTTCAGCAGATCCAAAGCTGTTAGTG 646
Query 598 TTTTTGAAGTCGTATCGTAATACAGTTCCTGTTCCAAGACATTGGTCCCAGAAGAGAAAA 657
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 TTTTTGAAGTCGTACCGGAATACAGTTCCTGTTCCAAGACATTGGTCGCAGAAGAGAAAA 706
Query 658 TATTTGCAGGG 668
|||||||||||
Sbjct 707 TATTTGCAGGG 717
> AT1G11520.1 | Symbols: | pliceosome associated protein-related
| chr1:3873029-3873619 FORWARD LENGTH=591
Length=591
Score = 453 bits (245), Expect = 3e-126
Identities = 296/319 (93%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 1345 CTGTCAAGCACTCCTACTGGTATTGAGACACCAGATGCAATTGAACTTCGTAAGGAACAG 1404
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 277 CTGTCAAGCACTCCTACTGGTATTGAGACACCGGATGCAATTGAACTTCGTAAGGAACAG 336
Query 1405 AGAAAGGAACCCGATAGGCCTCTATACCAGGTACTCGAAGAAAAGGGAGAGAGTGTTG-- 1462
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 337 AGAAAGGAACCTGATAGGGCTCTATACCAGGTACTTGAAGAAAAGGGAGAGAGTGTTGTT 396
Query 1463 -CTCCTGGAACAGTGCTGGGAACCACACACACATACGTTATTAAGACTGGTACTCAAGAC 1521
||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 397 GCTCCTGGAACATTGCTGAGAACTACACACACATACGTTATTAAGACTGGTACTCAGGAC 456
Query 1522 AAGACGGGAGCCAAAAGGGTTGATTTGCTGAGAGGGCAAAAGACAGACAGAGTGGATGTC 1581
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 457 AAGACGGGAACCAAAAGGGTTGATTTGCTGAGAGGGCAAAAGACAGATAGAGTGGATTTC 516
Query 1582 AGTTTACAGCCAGAAGAGCTGGATGCTATGGAAAATGTGTTACCTGCCAAGTATGAGGAG 1641
||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||
Sbjct 517 AGTTTACAGCCAGAAGAGCTGGATGCTATGGGAAATGTTTTAC-----A-GTATGAGGAG 570
Query 1642 GCAAGAGAAGAAGAGAAAT 1660
||||||||||| |||||||
Sbjct 571 GCAAGAGAAGAGGAGAAAT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5