BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946021

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21620.1 | Symbols:  | glycine-rich protein | chr4:11491482-...   667    0.0  


> AT4G21620.1 | Symbols:  | glycine-rich protein | chr4:11491482-11492167 
FORWARD LENGTH=686
Length=686

 Score =  667 bits (361),  Expect = 0.0
 Identities = 412/437 (94%), Gaps = 1/437 (0%)
 Strand=Plus/Plus

Query  1    TAAATAACTACACTACCGAAAATGCTCACTAAATCTATCCTTTTGGCTTCTCTCCTTATC  60
            |||||| ||||| |||| |||||| |||| ||||||||||||||||||||||| ||||||
Sbjct  17   TAAATATCTACATTACCAAAAATGTTCACAAAATCTATCCTTTTGGCTTCTCTTCTTATC  76

Query  61   ATCATCTTCGTCTCTGCTACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA  120
            |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   ATCATCCTCGTCTCTGCAACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGA  136

Query  121  TTCGGTGGAGTGCCCGGATCCGGATTTATACCCGGGTTTGGAGACGGGTTTCCGGGGACT  180
            |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  137  TTCGGTGGTGTACCCGGATCCGGATTTATACCCGGGTTTGGAAACGGGTTTCCGGGGACT  196

Query  181  GGAGTTGGTGGAGGATACGGCGGAGGGTTTGGTGGTCCTAGCGGTGGATTTGGGAAAGGG  240
            ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct  197  GGAGTTGGTGGTGGATACGGTGGAGGGTTTGGTGGTCCTAGCGGAGGGTTTGGGAAAGGA  256

Query  241  GGTGTGGTGAGACCAACTGTGACTTGCAGAGAGAAAGGACCTTGTTACGGCAAGAAGCTG  300
            ||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||| 
Sbjct  257  GGTGTGGTGAGACCAACGGTTACTTGCAAAGAGAAAGGACCTTGTAACGGCAAGAAGCTT  316

Query  301  AGGTGTCCTGCTAAGTGTTTCAAATCTTTCAGCCGCTCCGGGAAAGGATACGGCGGTGGT  360
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  317  AGGTGTCCTGCTAAGTGTTTCAAATCTTTTAGCCGCTCCGGGAAAGGATACGGCGGTGGA  376

Query  361  GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAATGTATCGCTTATTGTTAAGAT  420
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  377  GGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAGTGTATCGCTTATTGTTAAGAT  436

Query  421  ATAATAAAAGATCACAT  437
            |||||||| ||||||||
Sbjct  437  ATAATAAA-GATCACAT  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5