BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946041
Length=1186
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21470.1 | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/F... 1941 0.0
> AT4G21470.1 | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/FMN
hydrolase | chr4:11431105-11433322 FORWARD LENGTH=1444
Length=1444
Score = 1941 bits (1051), Expect = 0.0
Identities = 1128/1166 (97%), Gaps = 2/1166 (0%)
Strand=Plus/Plus
Query 22 TAATGTCGATGAGCAATTCTTTGAAAAAGCTCACTTCTTGTGTTCTTATTGATCTCGATG 81
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 178 TAATGTCGATGAGCAATTCCTTGAAAAAGCTCTCTTCTTGTGTTCTTATTGATCTCGATG 237
Query 82 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAGTATTTGTGTAAAT 141
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 238 GTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAATACTTGTGTAAAT 297
Query 142 ATGGTCAACAGTGGGATGGAAGAGAATCATTGAAGATAGTTGGGC-AAACTCCATTAGAA 200
||||| |||||||||||||||||||||||||||| |||||| ||| |||||||| |||||
Sbjct 298 ATGGTAAACAGTGGGATGGAAGAGAATCATTGAAAATAGTT-GGCAAAACTCCAGTAGAA 356
Query 201 GCTGCTACTACCATTGTTGAAGATTATGGACTTCCTTGTAAAGTTGATGAATTCAATTCA 260
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GCTGCTACTACTATTGTTGAAGATTATGAACTTCCTTGTAAAGTTGATGAATTCAATTCT 416
Query 261 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCCCTTCCTGGTGCCAAT 320
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 GAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCTCTTCCTGGTGCCAAT 476
Query 321 CGTTTGATTCGGCATTTGAAGTGTCATGGAGTACCTGTGGCCTTGGCTTCCAATTCTTCA 380
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 477 AGGTTGATTCGACATTTGAAGTGTCATGGAGTACCTGTGGCTTTGGCTTCCAATTCTTCA 536
Query 381 AGAGCTAATATTGAATCCAAAATTTCACATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 440
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 AGAGCAAATATTGAATCCAAAATTTCATATCATGAAGGGTGGAAGGAATGCTTCTCGGTT 596
Query 441 ATTGTCGGTAGTGATGAAGTTTCCAAAGGAAAGCCTTCTCCTGATATTTTTCTTGAAGCA 500
||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 597 ATTGTTGGTAGTGATGAAGTCTCTAAAGGAAAGCCTTCTCCTGATATTTTTCTCGAAGCA 656
Query 501 GCGAAAAGATTGAATAAAGATCCAGCAGATTGTTTGGTTATTGAAGATTCTGTGCCTGGT 560
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 657 GCGAAAAGATTGAAGAAAGATCCAGCTGACTGTTTGGTTATTGAAGATTCTGTGCCTGGT 716
Query 561 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAA 776
Query 621 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGGCCTGAA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 777 ACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAA 836
Query 681 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGG 896
Query 741 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCC 956
Query 801 ACAGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTTGAACATCCTTCGGGAGTG 860
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 ACCGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTGGAACATCCTTCGGGAGTG 1016
Query 861 TACTTTGGTTGGGCAGGCTTGGCAACGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 920
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 TACTTTGGTTGGGCAGGCTTGGCAAAGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGT 1076
Query 921 TGGAATCCTTATTTCAACAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 980
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGGAATCCTTATTTCAATAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTC 1136
Query 981 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATAATTGTTGGCTATATACGCCCTGAG 1040
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1137 ACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATTATCGTTGGCTATATACGCCCTGAG 1196
Query 1041 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCA 1256
Query 1101 GAGAAAGCTCTTGATCTTCCATCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAGAAAGCTCTTGATCTTCCTTCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAA 1316
Query 1161 GGATAGAAGCATTTATGTAAAGAATT 1186
||||||||| |||||| ||||||||
Sbjct 1317 TGATAGAAGCTTTTATGAAAAGAATT 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58232632200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5