BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946135 Length=1475 Score E Sequences producing significant alignments: (Bits) Value AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase h... 2425 0.0 > AT4G20360.1 | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase homolog E1B | chr4:10989952-10991709 FORWARD LENGTH=1758 Length=1758 Score = 2425 bits (1313), Expect = 0.0 Identities = 1429/1484 (96%), Gaps = 11/1484 (1%) Strand=Plus/Plus Query 1 GCTCTCCAAATCCGTCTT-CCATGGCGATTTCGGCTCCAGCCGCTTGttcttcttcctct 59 ||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 64 GCTCTCCAATTCCATCTTCCCATGGCGATTTCGGCTCCAGCCGCTTGTTCTTCCTCCTCT 123 Query 60 agacttctctgttcctactcctctccttctccttctctctGTCCCGCCATTTCCACCTCT 119 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 AGAATTCTCTGTTCCTACTCCTCTCCTTCTCCTTCTCTCTGTCCCGCCATTTCCACCTCT 183 Query 120 GGTAAGCTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACT 179 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTAAACTCAAAACCCTAACTCTCTCTTCCTCCTTCCTCCCTTCTTACTCATTAACCACC 243 Query 180 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 ACCTCCGCTTCTCAATCCACTCGTCGCTCCTTCACCGTCCGCGCCGCTCGTGGAAAGTTC 303 Query 240 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGTAAGACT 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 304 GAGAGGAAGAAGCCTCATGTCAACATCGGAACCATCGGTCATGTTGACCATGGGAAAACT 363 Query 300 ACTTTAACCGCAGCTCTCACCATGGCTCTTGCTTCAATTGGTTCCAGCGTCGCCAAAAAG 359 ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 364 ACTTTAACCGCAGCTCTAACCATGGCTCTCGCTTCCATTGGTTCCAGCGTCGCTAAAAAG 423 Query 360 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 TACGACGAGATTGACGCTGCGCCGGAGGAGAGAGCTCGTGGTATCACAATCAACACTGCT 483 Query 420 ACTGTGGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 479 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 ACTGTTGAGTACGAGACTGAGAATCGTCACTACGCTCACGTTGATTGTCCTGGTCACGCT 543 Query 480 GATTACGTTAAGAACATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 539 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 GATTACGTTAAGAATATGATTACCGGAGCTGCACAGATGGACGGAGCTATCCTCGTTGTT 603 Query 540 TCCGGCGCCGACGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCGAAGCAGGTT 599 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 604 TCCGGCGCCGATGGTCCTATGCCTCAGACTAAAGAGCATATCCTTTTGGCTAAGCAGGTT 663 Query 600 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 GGTGTTCCTGATATGGTTGTGTTTCTTAACAAAGAGGATCAAGTAGATGATGCAGAGTTG 723 Query 660 TTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCGTATGAATTTAACGGTGAT 719 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 724 CTAGAGCTCGTTGAGCTTGAGGTTCGTGAGCTTCTCTCGTCTTATGAATTTAACGGTGAT 783 Query 720 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCTGTGGAGACTCTCACTGAGAATCCT 779 ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 784 GATATTCCGATTATCTCTGGTTCTGCTCTTTTAGCCGTTGAGACTCTTACTGAGAATCCT 843 Query 780 AATGTGAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 839 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 AAGGTTAAGAGAGGTGATAACAAATGGGTAGATAAGATTTATGAACTTATGGATGCTGTT 903 Query 840 GATAG-TTACATCCCAATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 898 ||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 GAT-GATTACATCCCTATCCCTCAGAGACAAACTGAATTGCCATTCTTGTTAGCTGTTGA 962 Query 899 GGATGTGTTCTCTATCACGGGACGTGGTACTGTGGCTACAGGGCGTGTCGAGAGAGGTAC 958 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 963 GGATGTGTTCTCTATCACTGGACGTGGTACGGTGGCTACAGGGCGTGTCGAGAGAGGTAC 1022 Query 959 GGTTAAGGTAGGAGAGACTGTAGATTTAGTTGGTTTAAGGGAAACTAGGAGCTACACAGT 1018 |||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || Sbjct 1023 GGTTAAGGTAGGAGAGACTGTAGATTTAGTGGGTTTGAGGGAGACTAGGAGTTACACTGT 1082 Query 1019 CACTGGGGTTGAAATGTTTCAGAAGATTCTCGATGAGGCTTTAGCTGGTGACAATGTAGG 1078 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1083 CACTGGGGTTGAAATGTTTCAGAAGATTCTTGATGAGGCTTTAGCTGGTGACAATGTAGG 1142 Query 1079 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 GTTGTTGCTTAGGGGTATTCAAAAGGCTGATATTCAGAGAGGTATGGTTTTAGCTAAGCC 1202 Query 1139 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTGTGTATGTGTTGAAGAAAGAAGA 1198 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || Sbjct 1203 GGGATCGATTACTCCACATACCAAGTTTGAAGCAATTATCTATGTGTTGAAGAAAGAGGA 1262 Query 1199 AGGTGGAAGGCATTCTCCATTCTTTGCAGGTTACAGGCCTCAGTTCTACATGAGGACGAC 1258 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1263 AGGTGGAAGGCATTCTCCATTCTTTGCAGGGTACAGGCCTCAGTTCTACATGAGGACGAC 1322 Query 1259 TGATGTTACAGGTAAAGTGACAAAGATCATGAACGACAAAGACGAAGAGTCGAAGATGGT 1318 ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1323 TGATGTTACGGGTAAAGTGACGAAGATCATGAACGACAAAGATGAAGAGTCGAAGATGGT 1382 Query 1319 TATGCCTGGTGATCGAGTGAAGATAGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1378 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1383 TATGCCCGGTGATCGAGTGAAGATTGTTGTTGAGCTTATTGTGCCGGTGGCTTGTGAACA 1442 Query 1379 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTCAGG- 1437 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1443 AGGGATGAGGTTTGCTATCAGAGAAGGAGGAAAGACTGTTGGTGCTGGAGTTATTG-GGA 1501 Query 1438 CTATCATCGAAT-A--A---GGTTTTAGAGAGTTTCATATAGTG 1475 | ||| |||||| | | |||||||||||||||||||||||| Sbjct 1502 CGATCCTCGAATGATTATAAGGTTTTAGAGAGTTTCATATAGTG 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72740589705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5