BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946158 Length=1630 Score E Sequences producing significant alignments: (Bits) Value AT4G20070.1 | Symbols: ATAAH, AAH | allantoate amidohydrolase |... 2507 0.0 > AT4G20070.1 | Symbols: ATAAH, AAH | allantoate amidohydrolase | chr4:10861455-10864696 FORWARD LENGTH=1838 Length=1838 Score = 2507 bits (1357), Expect = 0.0 Identities = 1544/1632 (95%), Gaps = 22/1632 (1%) Strand=Plus/Plus Query 4 CTCTTCAATCGGCAGCCATGGTGGttcctcatccttcttcctcctcctctagatctcatc 63 ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 77 CTCTTAAATCGGCAGCCATGGCGGTTCCTCATCCTTCTTCTTCCTCCTCTAGATCTCATC 136 Query 64 ctttcctctccCATGTCTATCACACTAGCTTccatcttcatcatcataaccatcaccatc 123 |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| Sbjct 137 CTTTCCTCTCCCATGTCTATCACACTAGCTTCCA---TCATCATCAT---CAT---CAT- 186 Query 124 aacatcatcatccatcGCTTGTACTCTTTTGGTgtctcgtgttttctctgttatctcctc 183 | |||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| Sbjct 187 ---A--ATCATCCATCGCTTGTGCTCTTCTGGTGCCTCGTGTTTTCTCTATTATCTCCTC 241 Query 184 tcgctctctcctcttcatcgtcgtcgtcttcttcttcctc-ta--cgtcgtcatcgtcat 240 |||||||||| || ||||| ||||| |||||||||||||| | |||||||||| || | Sbjct 242 TCGCTCTCTCATCATCATCTTCGTCTTCTTCTTCTTCCTCAGACTCGTCGTCATCATCGT 301 Query 241 cttctcaaatctctctt-GGAATCGGTGAAACAGAAGTGACAAAGCATGATCTGCATCAG 299 | || || |||||| || ||||||||||||||||||| ||| |||||||||||||||||| Sbjct 302 CCTCCCATATCTCT-TTAGGAATCGGTGAAACAGAAGGGACGAAGCATGATCTGCATCAG 360 Query 300 GCGATCCTAAGGGACGAAGCTGTAGCAAGGTTACACGAGCTTGGACAGGTGAGTGATGCA 359 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 GCGATCCTAAGGGACGAAGCTGTAGCAAGATTACACGAGCTTGGACAGGTGAGTGATGCA 420 Query 360 GTTGCCCATC-TAGAAAGGACTTTTATGAGTCCAGCATCAATAAGAGCGATAGATCTTAT 418 | | |||| | |||| ||||||||||||||||||||||| |||||||| ||| |||||| Sbjct 421 GCTACCCA-CTTAGAGAGGACTTTTATGAGTCCAGCATCCATAAGAGCAATACCTCTTAT 479 Query 419 CCGTCGATGGATGGAAGATGCTGGTTTATCAACATGGGTTGATTACATGGGAAATGTGCA 478 |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 480 CCGTGGATGGATGGAAGATGCCGGTTTATCAACATGGGTTGATTACATGGGAAATGTACA 539 Query 479 TGGTCGAGTGGAACCAAAGAATGGAAGCTCACAGGCTCTTCTAATTGGTTCCCATATGGA 538 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 540 TGGTCGAGTGGAACCTAAGAATGGAAGTTCACAGGCTCTTCTAATTGGTTCCCATATGGA 599 Query 539 CACAGTGATCGATGCTGGTAAATATGATGGCTCACTAGGCATCATTTCTGCAATCTCTGC 598 ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 600 CACTGTGATTGATGCTGGTAAATATGATGGCTCATTAGGCATCATTTCTGCAATCTCTGC 659 Query 599 ATTGAAGGTTCTGAAAATAAATGGAAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 658 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 660 ATTGAAGGTTCTGAAAATAGATGGGAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 719 Query 659 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 779 Query 719 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 839 Query 779 AGATGCTCTTAAAGAGAACTCCATAGACATAACAGAGGAAAACTTAATGCAGCTGAAGTA 838 ||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||| Sbjct 840 AGATGCTCTTAAAGAGAACTCTATAGACATAACAGATGAAAACTTGATGCAGTTGAAGTA 899 Query 839 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATCGAGCAAGGGCCGGTGCTTGA 898 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 900 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATTGAGCAAGGGCCGGTGCTTGA 959 Query 899 ATGGGTTGGTTATCCTTTAGGAGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 958 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 960 ATGGGTTGGTTATCCTTTAGGTGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 1019 Query 959 TACTGTTAAAGGCTCTCAAGGACATGCTGGAACAGTTCCAATGTCACTGCGTCAAGACCC 1018 |||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| Sbjct 1020 TACTGTAAAAGGATCTCAAGGACATGCTGGTACAGTTCCAATGTCAATGCGTCAGGACCC 1079 Query 1019 TATGACTGGTGCCGCGGAGCTGATTGTACTATTGGAAAGCGTTTGCAAAAACCCTAAAGA 1078 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1080 TATGACTGGTGCTGCGGAGCTGATTGTACTATTGGAAAGTGTTTGCAAAAACCCTAAAGA 1139 Query 1079 TTACTTATCTTGCAACGGTCAATGCAACGAAGACACAATAGAATCCCTTGCTAATTCACT 1138 ||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||| Sbjct 1140 TTACTTATCTTGCAACGTTCAATGCAACGAGGATACAGTAGAATCCCTTGCTAATTCACT 1199 Query 1139 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1259 Query 1199 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1319 Query 1259 TGACTTATCAACTAGGATGTACAAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1318 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1320 TGACTTATCAACTAGGATGTACCAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1379 Query 1319 ACGCAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTCACAGCTGAAATC 1378 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1380 ACGAAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTTACAGCTGAAATC 1439 Query 1379 AGCAGGTCAGAGTGCACTTAAGAAAATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1438 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1440 AGCAGCTCAGAGTGCACTTAAGAAGATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1499 Query 1439 AATGAGTGGAGCAGGACATGATGCTATGGCTATGGCTCATTTAACTAAGGTGGGAATGTT 1498 |||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| Sbjct 1500 AATGAGTGGAGCAGGACATGATGCAATGGCTATGGCACACTTAACCAAGGTGGGAATGTT 1559 Query 1499 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTGTTAGATGACGA 1558 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1560 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTATTGGATGACGA 1619 Query 1559 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAG 1618 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAC 1679 Query 1619 AAATATATGAGA 1630 |||||||||||| Sbjct 1680 AAATATATGAGA 1691 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80521674180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5