BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946256 Length=1840 Score E Sequences producing significant alignments: (Bits) Value AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid d... 2724 0.0 > AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481786-10483857 FORWARD LENGTH=2072 Length=2072 Score = 2724 bits (1475), Expect = 0.0 Identities = 1733/1856 (93%), Gaps = 24/1856 (1%) Strand=Plus/Plus Query 3 aaaaacaaaaaCAGAGCAATGGActctgtttcttcttcttccttcatctcctccacattc 62 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 32 AAAAACAAAAGGAGAGCAATGGACTCTGTTTCTTCTTCTTCCTTCCTCTCCTCCACATTC 91 Query 63 tctcttcaccactctcttcttcgccgccgatcttcctctcct-ctcctcctccGTATCAA 121 |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 92 TCTCTTCATCACTCTCTTCTTCGCCGCCGATCTTCCTCTCCTACT-CTCCTCCGTATCAA 150 Query 122 CTCCGCAGTCGTCGAAGAACGTACTCCGATCACGAACCCAAGCGACAACAATGATCGTCG 181 |||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 151 CTCCGCCGTCGTCGAAGAACGTTCTCCAATCACAAACCCAAGCGACAACAATGATCGTCG 210 Query 182 TAACAAACCCAAAAAACTCCACAACCGAACCAATCACACCGCAGTCTCTTCTCCTGCGAA 241 |||||||||||||| ||||||||||||||||||||||||| |||||| || || |||| Sbjct 211 TAACAAACCCAAAACACTCCACAACCGAACCAATCACACCTTAGTCTCATCACCACCGAA 270 Query 242 ACCCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 301 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 ACTCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 330 Query 302 CACGTTCATCGATCCACCGTCACGTCCTTCCGTCGATCCAAAACACGTTCTCTCCGATAA 361 |||||||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| Sbjct 331 CACGTTCATCGATCCACCTTCACGTCCTTCCGTTGATCCAAAACATGTCCTCTCTGATAA 390 Query 362 CTTCGCTCCTGTTCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCTCTCT 421 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 391 CTTCGCTCCTGTCCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCACTCT 450 Query 422 TCCGCCGTCACTCAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 481 ||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 TCCACTGTCACTTAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 510 Query 482 TGGTCCTTACCATCTCTTTGACGGCGACGGTATGCTTCACGCGATTCGTATCCATAATGG 541 |||||||||||||||||| ||||||||||||||||||||||| || ||||| || || Sbjct 511 TGGTCCTTACCATCTCTTCGACGGCGACGGTATGCTTCACGCCATAAAAATCCACAACGG 570 Query 542 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAGTACAACGTGGAGAAACAAAC 601 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 571 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAATACAACGTCGAGAAACAAAC 630 Query 602 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTTAACGGTGTAACGGCATCAGTAGC 661 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 631 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTCAACGGTGTAACGGCGTCAGTAGC 690 Query 662 TCGTGGAGCTTTAACGGCGGTTAGAGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 721 |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| Sbjct 691 TCGTGGAGCTTTAACGGCAGCTAGGGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 750 Query 722 TGGTTTAGCTAATACAAGTCTTGCTTTCTTCTGTAACCGTCTCTTCGCTTTAGGAGAATC 781 ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||| Sbjct 751 TGGTTTAGCTAATACAAGTCTAGCTTTCTTCAGTAACCGTCTCTTTGCTTTAGGTGAATC 810 Query 782 TGATTTACCCTACGTCGTCCGATTAACTGATTCTGGAGATATTGAAACGATCGGACGGTA 841 |||||||||||||| |||||||||||| || || |||||||||||||||||||||||||| Sbjct 811 TGATTTACCCTACGCCGTCCGATTAACCGAATCAGGAGATATTGAAACGATCGGACGGTA 870 Query 842 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCAAAAATCGATCCAATAAC 901 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 871 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCTAAAACCGATCCAATAAC 930 Query 902 CGGAGAGACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACGTTTTTCCGGTT 961 |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 931 CGGAGAAACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACATATTTCCGGTT 990 Query 962 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1050 Query 1022 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCGGAGATTCAGATTGGGAT 1081 |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || Sbjct 1051 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCAGAGATTCAGCTTGGCAT 1110 Query 1082 GAGGATGAATCC-GATGGATTTGATGTT-T-GAAGGTGGTTCTCCGGTTGGTAATGATAA 1138 ||||||||| | | |||||||| ||| | |||||||||||||||||||||| |||||| Sbjct 1111 GAGGATGAA-CATGTTGGATTTG--GTTCTCGAAGGTGGTTCTCCGGTTGGTACTGATAA 1167 Query 1139 CGGAAAAACACCGAGGCTTGGAGTGATTCCAAAGTACGCCGGAGATGAATCGGAGATGAA 1198 ||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1168 CGGAAAAACTCCAAGGCTTGGAGTGATTCCTAAGTACGCCGGAGATGAGTCGGAGATGAA 1227 Query 1199 ATGGTTCGAAGTTCCTGGATTTAATATCATTCACGCCATTAATGCTTGGGATGAAGACGA 1258 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 1228 ATGGTTCGAAGTTCCTGGATTCAATATCATTCACGCTATTAATGCTTGGGATGAAGATGA 1287 Query 1259 TGGAAACTCCGTCGTTTTGATCGCTCCGAATATTATGTCAATTGAACATACTTTAGAGAG 1318 ||||||| |||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 1288 TGGAAACAGCGTCGTTTTGATTGCACCGAATATTATGTCGATTGAACATACTTTAGAGAG 1347 Query 1319 GATGGATTTGGTTCACGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGAATTGT 1378 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1348 GATGGATCTGGTTCATGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGGATTGT 1407 Query 1379 GACACGTCATCCGATTTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1438 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1408 GAGACGTCATCCGATCTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1467 Query 1439 CGGAAGACAG-AGCAGGTACGTTTACGCGGGGATTGGAGATCCGATGCCGAAAATCTCCG 1497 ||| ||| | ||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1468 CGGGAGAT-GTAGCAGGTACGTTTACGCGGCGATTGGAGATCCGATGCCGAAGATCTCCG 1526 Query 1498 GAGTTGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGCACGGTGGCGCGTAAAA 1557 | || |||||||||||||||||||||||||||||||||||||| |||||||| |||| || Sbjct 1527 GTGTGGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGTACGGTGGCCCGTAGAA 1586 Query 1558 TGTACGGTAAAGGTTGTTACGGTGGTGAACCGTTTTTCGTAGCTAGGGATCCTGGGAATC 1617 |||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 1587 TGTACGGTTCAGGTTGTTACGGCGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTAATC 1646 Query 1618 CGGAGGCGGAGGAGGATGATGGTTACGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1677 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1647 CGGAGGCGGAGGAGGATGATGGTTATGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1706 Query 1678 AATCGAAGTTTCTGGTGATGGACGCAAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1737 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1707 AATCGAAGTTTCTGGTGATGGACGCTAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1766 Query 1738 GGCTACCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTGAAGGAGAGTGACCT-A 1796 || | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 1767 GGTTGCCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTCAAGGAAAGTGACCTTA 1826 Query 1797 A----CT--A----TA--GGTAACTGCAATAGTTAGTGGAATAATTAAGTTCTTAA 1840 | || | || ||||||||||||||||| | |||||||||||| ||||| Sbjct 1827 ATAAGCTTTAACAATATAGGTAACTGCAATAGTTAATAGAATAATTAAGT-CTTAA 1881 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91063788630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5