BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946262
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19120.1 | Symbols: ERD3 | S-adenosyl-L-methionine-dependent... 2961 0.0
> AT4G19120.1 | Symbols: ERD3 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr4:10460295-10464174
REVERSE LENGTH=2404
Length=2404
Score = 2961 bits (1603), Expect = 0.0
Identities = 1767/1847 (96%), Gaps = 7/1847 (0%)
Strand=Plus/Plus
Query 5 AAAAGGA-TTCTGTTGAAACAATGAAGTATAAAGATGAGAAGTACGAGAAAGCTGAGAAA 63
||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 AAAAGGAGTT-TGTTAAAACAATGAAGTATAAAGATGAGAAGTACGAGAAAGCTGAGAAG 270
Query 64 GGTTCAAGGGTTTTACCCAAGACCA-TCTTACTGATTCTTCTTTGTGGACTTTCGTTCTA 122
||||||||| |||| ||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 271 GGTTCAAGGATTTTGCCCAAGA-CAGTTTTACTGATTCTTCTTTGTGGACTTTCGTTCTA 329
Query 123 CCTTGGTGGGTTATATTGTGGGAAGAACAAAATCGAAGTTAATGATGTTGCAAAAGCTGA 182
||||| ||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 330 TCTTGGAGGGTTGTATTGTGGGAAGAACATAATTGAAGTTAGTGATGTTGCAAAAGCTGA 389
Query 183 ATCTTCTTCCTTAGATGTTGATGACTCTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 ATCTTCTTCCTTAGATGTTGATGACTCTCTTCAAGTCAAATCTGTTTCTTTCTCGGAATG 449
Query 243 TAGCAGTGACTACCAGGATTACACTCCGTGCACTGATCCAAGGAAATGGAAAAAGTATGG 302
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 450 TAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGGAAATGGAAGAAGTATGG 509
Query 303 TACTCACAGGCTTACTTTCATGGAAAGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTG 362
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 510 TACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTG 569
Query 363 TCTGGTTCCTCCTCCTAATGGGTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGA 422
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCTGGTTCCTCCTCCTGATGGCTATAAGCCACCGATAAGATGGCCAAAGAGCAAAGACGA 629
Query 423 ATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAGCAAAAATCTAACCAGAACTG 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 630 ATGTTGGTACAGGAATGTGCCATATGATTGGATTAACAAGCAGAAATCTAACCAGAATTG 689
Query 483 GCTAAGGAAAGAGGGTGAAAAGTTCATTTTTCCTGGTGGAGGTACGATGTTTCCACATGG 542
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 690 GCTAAGGAAAGAGGGTGAAAAGTTCATTTTTCCTGGTGGGGGTACAATGTTTCCACATGG 749
Query 543 AGTCAGTGCATATGTCGATTTGATGCAAGATCTGATCCCTGAAATGAAAGATGGGACTAT 602
||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 750 AGTCAGTGCCTATGTCGATCTGATGCAAGATTTGATCCCTGAAATGAAAGATGGGACTAT 809
Query 603 ACGCACAGCCATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGATTTGTTGGACCG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ACGCACAGCCATTGACACTGGTTGTGGGGTTGCGAGCTGGGGAGGCGATTTGTTGGACCG 869
Query 663 CGGTATCCTCACGGTATCACTTGCCCCGAGAGATAATCACGAAGCTCAAGTCCAGTTTGC 722
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 870 GGGTATCCTCACGGTATCACTCGCCCCGAGGGATAATCACGAAGCTCAAGTCCAGTTTGC 929
Query 723 TCTAGAACGTGGAATTCCTGCAATTCTCGGCATCATTTCCACTCAACGTCTCCCTTTCCC 782
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 930 TCTAGAACGTGGAATTCCTGCGATTCTTGGCATCATTTCCACTCAACGTCTCCCTTTCCC 989
Query 783 TTCAAACTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTCGG 842
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 990 TTCAAATTCATTTGATATGGCTCATTGCTCAAGATGCCTTATTCCGTGGACAGAATTTGG 1049
Query 843 TGGAGTATATCTTCTGGAGGTTCACCGTATCCTAAGGCCTGGTGGCTTCTGGGTCTTATC 902
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1050 TGGAGTATATCTTCTGGAGGTTCACCGTATCCTAAGACCTGGTGGCTTCTGGGTCTTATC 1109
Query 903 TGGTCCACCAGTCAACTATGAGAACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGGTCCACCAGTCAACTATGAGAACCGTTGGAAAGGTTGGGACACAACCATTGAAGAGCA 1169
Query 963 GAGATCAAACTACGAGAAGCTGCAAGAATTGTTATCTTCAATGTGCTTCAAAATGTATGC 1022
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1170 GAGATCAAACTACGAGAAGCTGCAGGAATTGTTATCTTCAATGTGCTTCAAAATGTATGC 1229
Query 1023 CAAGAAAGACGATATCGCAGTGTGGCAGAAATCTTCTGACAATCTATGCTATAACAAGTT 1082
||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||
Sbjct 1230 CAAGAAAGACGATATCGCAGTCTGGCAAAAATCTCCAGACAATCTATGCTATAACAAGTT 1289
Query 1083 GTCTAACGACCCTGATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATTCTGC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 GTCTAACGACCCTGATGCATACCCGCCAAAATGTGACGACAGCCTTGAGCCAGATTCTGC 1349
Query 1143 TTGGTATACACCATTACGCCCTTGTGTTGTGGTTCCAAGCCCTAAGCTTAAGAGGACGGA 1202
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1350 TTGGTATACACCATTACGCCCTTGCGTTGTGGTTCCAAGCCCTAAGCTAAAGAAGACGGA 1409
Query 1203 TTTGGAATCTACTCCCAAGTGGCCAGAGAGATTGCACACAACTCCTGAAAGAATCTCTGA 1262
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1410 TTTGGAATCTACTCCCAAGTGGCCAGAAAGATTACACACAACTCCTGAAAGAATCTCTGA 1469
Query 1263 TGTTCCTGGAGGAAATGGTAACGTGTTTAAACATGATGATAGCAAATGGAAAACAAGGGC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TGTTCCTGGAGGAAATGGTAACGTGTTTAAACATGATGATAGCAAATGGAAAACAAGGGC 1529
Query 1323 TAAGCATTACAAGAAGCTGTTACCCGCGATTGGTTCTGACAAGATTCGGAATGTGATGGA 1382
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1530 TAAGCATTACAAGAAGCTGTTACCCGCGATTGGTTCTGACAAAATTCGGAATGTTATGGA 1589
Query 1383 TATGAACACTGCTTATGGAGGTTTGGCTGCTGCTCTGGTCGATGATCCTTTGTGGGTTAT 1442
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1590 TATGAACACTGCTTATGGAGGTTTGGCTGCTGCTCTGGTCAATGATCCTTTGTGGGTCAT 1649
Query 1443 GAACGTTGTCTCTTCTTACGCTGCGAATACACTTTCCGTTGTGTTTGATCGTGGATTGAT 1502
||| || ||||||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct 1650 GAATGTCGTCTCTTCTTATGCTGCAAACACACTTCCCGTTGTGTTTGATCGTGGATTGAT 1709
Query 1503 TGGAACATATCATGACTGGTGTGAAGCTTTTTCGACATATCCAAGAACTTATGATCTTCT 1562
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1710 CGGAACATATCATGACTGGTGTGAAGCTTTTTCGACGTATCCAAGAACTTATGATCTTCT 1769
Query 1563 TCACGTTGATGGGCTATTTACATCTGAAAGCCAAAGGTGTGATATGAAATATGTAATGCT 1622
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1770 TCACGTAGATGGGCTGTTTACATCTGAAAGCCAGAGGTGTGATATGAAATATGTAATGCT 1829
Query 1623 GGAAATGGATAGGATCTTGCGTCCTAACGGGTATGCAATTATACGCGAATCTAGCTACTT 1682
|||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1830 GGAAATGGATAGGATCTTACGTCCTAGCGGGTATGCGATTATACGCGAATCGAGCTACTT 1889
Query 1683 CGTAGATACGATTGCCTCAGTTGCTAAAGAACTGAGATGGAGTTGCCGTAAGGAACAAAC 1742
|| |||| | ||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1890 CGCAGATTCAATTGCTTCTGTTGCTAAAGAGCTGAGATGGAGTTGCCGTAAAGAACAAAC 1949
Query 1743 AGAGTCTGAATCAGCTAATGAGAAGCTCTTGATTTGCCAGAAGAAGCTGTGGTATTCATC 1802
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 AGAGTCTGCATCAGCCAATGAGAAGCTCTTGATTTGCCAGAAGAAGCTGTGGTATTCATC 2009
Query 1803 TAACGCAAGTTCAGAAACaaaataaa-aag-aaaaaagaaa-aaaTA 1846
||||||||||||||||||||| |||| || |||||||||| |||||
Sbjct 2010 TAACGCAAGTTCAGAAACAAATTAAATAAACAAAAAAGAAAGAAATA 2056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91415192445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5