BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946406
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18010.1 | Symbols: IP5PII, AT5PTASE2, 5PTASE2 | myo-inosito... 3193 0.0
> AT4G18010.1 | Symbols: IP5PII, AT5PTASE2, 5PTASE2 | myo-inositol
polyphosphate 5-phosphatase 2 | chr4:9991012-9994420 REVERSE
LENGTH=2444
Length=2444
Score = 3193 bits (1729), Expect = 0.0
Identities = 1896/1978 (96%), Gaps = 6/1978 (0%)
Strand=Plus/Plus
Query 1 TCTTTATCTGAGATCTGAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 60
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTTTTCTGAGATCTAAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 359
Query 61 GCCTTCGATTGTGATGAATAAATGGTTGAACATAAAACCTAAAGTTTACGACTTTAGCGA 120
||| || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 360 GCCATCAATTGTGATGAATAAATGGTTAAACAGAAAACCTAAAGTTTACGATTTTAGCGA 419
Query 121 AGACGAAATTGATACAGAGCCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGACGAAATTGATACAGAACCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 479
Query 181 TAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGAAGCGAAGCTGA 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGTAGCGAAGCTGA 539
Query 241 TCACGGCAATATTATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAGAGGAAACA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TCACGGCAATAATATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAAAGGAAACA 599
Query 301 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 659
Query 361 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCGCCGATGATCTCGAGATTGAAGA 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCTCCGATGATCTCGAGATTGAAGA 719
Query 421 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATCATCGGGTTTCAAGAAGTGGTTCC 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATTATCGGGTTTCAAGAAGTGGTTCC 779
Query 481 ATTAAACGCTGGAAACGTTTTTGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTAAACGCTGGAAACGTTTTCGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 839
Query 541 GATAATCCGTAGAACACTGAACAAATCCAATAAAGAATCGGTCGATGATCAATCGCCAAG 600
|||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 840 GATAATTCGTAGAACACTAAACAAATCCAATAAAGAATCAGTTTATGATCAATCGCCAAG 899
Query 601 CTGCAACAACAACGTTCTTCATAGATCTCACAGCGCGCCCTCGTCTCCTATTTTAGCACA 660
|||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 900 CTGCAACAACAACGCTCTTCATAGATCTCACAGCGCGCCGTCGTCTCCTATCTTGGCACA 959
Query 661 AGAAGCAAACTCCATTATCTCTGATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAAGCAAACTCCATTATCTCTCATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 1019
Query 721 AGACTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCAGA 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 GGATTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCACA 1079
Query 781 GCGGAATCCGAACATGGACTGGCCAGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 GCGGAATCCGAACATGGACTGGCCGGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 1139
Query 841 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGTTACC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGCTACC 1199
Query 901 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACACTTGAAACGGTCACG 960
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1200 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACAATTGAAACGCTCACG 1259
Query 961 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGATATTGATAATAGTTC 1020
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1260 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGAGATTGATAATAGGTC 1319
Query 1021 ATCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1379
Query 1081 AGATTCGTCTTCAGAGGAAGAGGAGGATGGCGACAAGATCAGAAATAGTTATGGATTACC 1140
|||||||||||| |||| || |||||||| |||||||||||||||||||||||||| ||
Sbjct 1380 AGATTCGTCTTCCCAGGACGAAGAGGATGGTGACAAGATCAGAAATAGTTATGGATTGCC 1439
Query 1141 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1499
Query 1201 AAGTAAGCAGATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1260
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGTAAGCAAATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1559
Query 1261 TGTCAACAACTTGAAAGTCTCGCCGGTCGGAGTTGGCTTGATGGGTTACATGGGAAACAA 1320
|||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 TGTCAACAACCTGAAAGTCTCACCGGTCGGAGTTGGCTTGATGGGCTACATGGGAAACAA 1619
Query 1321 GGGATCAGTGTCGATTAGCATGACATTATATCAATCACGAATGTGTTTTGTGTGTTCACA 1380
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1620 GGGATCAGTGTCGATTAGCATGACGTTGTATCAATCACGGATGTGTTTTGTGTGCTCACA 1679
Query 1381 CTTAACTTCTGGCCACAAAGACGGTGCAGAGCAACGCCGTAATGCTGACGTGTACGAAAT 1440
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1680 CTTAACTTCCGGCCACAAAGACGGTGCTGAGCAACGCCGGAATGCTGACGTGTACGAAAT 1739
Query 1441 CATACG-ACGGACTCGTTTCGCCTCGGTTCTTGATACCGATCAACCAAGAACGATTCCAT 1499
|||||| | |||||||||| || ||||||||||| || ||||||||||| ||||||||||
Sbjct 1740 CATACGTA-GGACTCGTTTTGCATCGGTTCTTGACACTGATCAACCAAGGACGATTCCAT 1798
Query 1500 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGGCAGACAGTG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1799 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGTCAGACGGTG 1858
Query 1560 AAGTAAGAAAGCTTGTCGCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1619
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AAGTAAGAAAGCTTGTCTCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1918
Query 1620 TTAGAGAACTAAGAAGAGGGCATGTTTTCGATGGATGGAGAGAAGGACCGATTAAATTCC 1679
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1919 TTAGAGAATTAAGAAGAGGGCATGTTTTTGATGGATGGAGAGAAGGACCGATTAAATTCC 1978
Query 1680 CTCCGACCTATAAATACGAATTCGATTCAGATCGTTACGCCGGAGAAACCTTgagagaag 1739
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1979 CTCCAACCTATAAATACGAATTCGATTCTGATCGTTACGCCGGAGAAAACTTGAGAGAAC 2038
Query 1740 -gagagaagaagagagCTCCTGCTTGGTGTGATAGAATATTATGGCTGGGAAAAGGAATA 1798
| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 2039 CG-GAGAAGAAGAGAGCTCCTGCTTGGTGTGATAGGATATTATGGTTAGGAAAAGGAATA 2097
Query 1799 AGACAAGAGTGTTATAAGAGATCGGAGATAAAAATGTCCGATCACCGGCCAGTGACTTCG 1858
|||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2098 AGACAAGAATGTTATAAGAGATCGGAGATAAGAATGTCCGATCACCGGCCGGTGACTTCG 2157
Query 1859 ATATTTAACGTCGGAGTTGAAGTTTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 1918
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2158 ATTTTTAACGTTGGAGTTGAAGTGTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 2217
Query 1919 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCCTTTTGAGTCTA-TA-GTGt 1974
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 2218 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCTTTTTGAGTCTAATAAGTGT 2275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5