BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946470
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17560.1 | Symbols: | Ribosomal protein L19 family protein ... 1112 0.0
AT5G47190.1 | Symbols: | Ribosomal protein L19 family protein ... 577 6e-164
> AT4G17560.1 | Symbols: | Ribosomal protein L19 family protein
| chr4:9780279-9782183 FORWARD LENGTH=1173
Length=1173
Score = 1112 bits (602), Expect = 0.0
Identities = 684/723 (95%), Gaps = 7/723 (1%)
Strand=Plus/Plus
Query 1 GTAACTGAGAG-TT--TGAAGCTATGGCGACGAGCTTTCATCGTCTTCCTCAGGCATTGC 57
||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 42 GTAACTGAGAGTTTGCTGCAGCTATGGCGATGAGCTTTCATCGTCTTCCTCAGGCATTGC 101
Query 58 ATATGATACCGAGAAACCCTTCTCAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTAT 117
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 102 ATATGATACCCAGAAACCCTACGCAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTAT 161
Query 118 CATGCGCACCATCGGTGAATTCTCGTGTATCAGTTTCTAGGCTCTCTCTGAATCATTCCG 177
| || ||||||||| || |||||||| |||||||||||||||| |||||||||||| |||
Sbjct 162 CGTGTGCACCATCGATGGATTCTCGTATATCAGTTTCTAGGCTTTCTCTGAATCATCCCG 221
Query 178 GCTCGAAATTTGGGTTCTCACTCGATACTAGGGTGAGAAATGAGTTTGTCGTTAGAGCAG 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 222 GCTCGAAATTTGGGTTCTCACTCGATACTAGGGTGAGAAATGAGTTTATCGTTAGAGCAG 281
Query 238 AAGAAGGTAACACTGAAGCTGAATCTGAAGAGGCTGTTGCTGAAATCGCTGATACGGAAG 297
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 282 AAGAAGGTAACACAGAAGCTGAATCTGAAGAATTTGTTGCTGAAATCGCTGATACGGAAG 341
Query 298 GCAATGTAGAAGAAGTTGGT-GAAGCTAAACCT-CAGAGAAAACCGAGGATCAAGCTCGG 355
| |||||||| |||| |||| |||||||||||| || |||||||| ||||||||||||||
Sbjct 342 GAAATGTAGAGGAAG-TGGTCGAAGCTAAACCTACA-AGAAAACCTAGGATCAAGCTCGG 399
Query 356 AGATGTCATGGGGATACTGAATCAGAGAGCAATTGAGGTTTCAGAGAAAGTAAGACCTGT 415
||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||
Sbjct 400 AGATGTCATGGGGATACTGAACCAGAAAGCAATTGAGGTAGCAGAGAAAGTGAGACCTGT 459
Query 416 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 519
Query 476 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 579
Query 536 CATTCGTATTCGGAGAATTATTGCGGGTATTGGTGTTGAAATCGTGTTTCCCATATACTC 595
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 580 CATTCGTATTCGGAGAATTATTGCGGGTATCGGTGTTGAAATTGTGTTTCCCATATACTC 639
Query 596 TCCCAACATCAAAGAGATAAAAGTGGTGAGTCACAGAAAAGTGAGAAGAGCAAGGCTTTA 655
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 640 TCCCAACATCAAAGAGATAAAAGTGGTGAGTCACAGGAAAGTAAGAAGAGCAAGGCTTTA 699
Query 656 CTATCTGAGAGACAAGCTTCCTCGTCTCTCCACTTTCAAGTGAAGACCATCCACCGTGCT 715
||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 700 CTATCTGAGGGACAAGCTTCCTCGTCTGTCCACTTTCAAGTGAACACCATCCACCGTGCT 759
Query 716 GTG 718
|||
Sbjct 760 GTG 762
> AT5G47190.1 | Symbols: | Ribosomal protein L19 family protein
| chr5:19164246-19166107 REVERSE LENGTH=919
Length=919
Score = 577 bits (312), Expect = 6e-164
Identities = 580/704 (82%), Gaps = 40/704 (6%)
Strand=Plus/Plus
Query 21 ATGGCGACGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCGAGAAACCCTTCT 80
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 44 ATGGCGACGAGCTCTCATCTTCTTCCTCAGGCATTGCATATGATACCGAGAACCCCTTCT 103
Query 81 CAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCATGCGCACCATCGGTGAATTCT 140
|| ||||||||||||||| ||||||| ||||| || | ||| |||| ||||| ||
Sbjct 104 TTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAGTGAACTCA 163
Query 141 CGTGTATCAGTTTCTAGGCTCTCTCTGAATCATTCCG-GCTCGAAATTTGGGTTC-TCAC 198
| |||||||||||||| | | ||| ||||||| || |||| || ||||| ||| ||
Sbjct 164 AGACTATCAGTTTCTAGGGTTTTTCTCAATCATT-CGAGCTCCAATTTTGGTTTCGCCA- 221
Query 199 TCGATACTAGGGTGAGAAATGAGTTTGTCGTTAGAGCAGAAGAAGGTAACACTGAAGCTG 258
||||| | | | |||||| |||||| ||| || ||| |||| | | | ||||||| ||
Sbjct 222 TCGATTCCAAGAAGAGAAAAGAGTTTATCGCTAAAGCTGAAG-A-G-AGTACTGAAGGTG 278
Query 259 AATCTGAAGAGGCTGTTGCT-GA-AAT-C-GCTG--A-T--A-CGGAAGGCA-ATGTAGA 307
|| || |||||||||| | || ||| | | || | | | ||||||| | | | |||
Sbjct 279 AAACT---GAGGCTGTTG-TGGAGAATGCTGTTGAAACTGAAGCGGAAGG-AGAAGGAGA 333
Query 308 AG--A-AGTT-----GG-TGAAGCTAAACCTCAG-AGAAAACCGAGGA-TCAAGCTCGGA 356
|| | ||| || ||||||||||||| | ||| | ||| || |||||||||||
Sbjct 334 AGCCACTGTTGCGGCGGAGGAAGCTAAACCTCCGTGGAAGA-CGA-GAGTCAAGCTCGGA 391
Query 357 GATGTCATGGGGATACTGAATC-AGAGAGCAATTGAGGTTTCAGAGAAAGTAAGACCTGT 415
||| |||||||| ||||||| | ||| ||| ||||||||| |||||| |||||||| ||
Sbjct 392 GATATCATGGGGCTACTGAA-CAAGAAAGCTATTGAGGTTGCAGAGACTGTAAGACCGGT 450
Query 416 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 475
||| | | | ||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 451 TCCTGGACTTAGGACTGGGGATATTGTAGAAATCAAACTGGAAGTTCCTGAGAACAAACG 510
Query 476 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 535
||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 511 TAGGCTATCTATCTACAAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTAC 570
Query 536 CATTCGTATTCGGAGAATTATTGCGGGTATTGGTGTTGAAATCGTGTTTCCCATATACTC 595
|| ||||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 571 TATCCGTATCCGGAGGATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCCATATACTC 630
Query 596 TCCCAACATCAAAG-AGATAAAAGTGGTGAGTCACAGAAAAGTGAGAAGAGCAAGGCTTT 654
||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 631 TCCCAACAT-AAAGGAGATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTT 689
Query 655 ACTATCTGAGAGACAAGCTTCCTCGTCTCTCCACTTTCAAGTGA 698
|||||||||| ||||| |||||||||||||| ||||| || |||
Sbjct 690 ACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTTTAAATGA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5