BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946577 Length=1702 Score E Sequences producing significant alignments: (Bits) Value AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose sy... 2566 0.0 AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-li... 898 0.0 > AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose synthase-like A01 | chr4:9345150-9349221 FORWARD LENGTH=1907 Length=1907 Score = 2566 bits (1389), Expect = 0.0 Identities = 1607/1711 (94%), Gaps = 19/1711 (1%) Strand=Plus/Plus Query 1 GCTTCAGTTCTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42 GCTTCAGTTTTAGAGCAACAATGTCTCTATTTCTGAAGCCCTTCCTCTTCCTATACGACA 101 Query 61 CCACTCTTAGTCTCCTCTTACTTCTGTTTAATGGAGGGAGTCTTGAAGATGCTGCAGCAA 120 ||||||||||||| |||||||||||||| |||||| |||||||||| ||| | |||||| Sbjct 102 CCACTCTTAGTCTTCTCTTACTTCTGTTCAATGGATGGAGTCTTGAGGATACAGCAGCAG 161 Query 121 CACAGGAGAGGCTTGAAGCAGACAAAAATGCTGCAGAGTCTGAATGGATCCAACTCCAAT 180 | || |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 162 CCCAAAAGAGGCGTGAAGCAGACAAAAATGCTGCAGAAACTGAATGGATCCAACTCCAAT 221 Query 181 ATTTGTGGACCAAAACGAGGAGTGTTGTATTACTTCCTGTTTTCAAGGGTTTGGTGGTTA 240 | |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| Sbjct 222 ACTTGTGGACCAAAACAAGGAGTGTTGTACTACTTCCCGTTTTCAAGGGTTTGGTGGTTA 281 Query 241 TGTGTTTGGTTCTATCTATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 300 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TGTGTTTGGTTCTATCCATTATAGTGTTCTTCGAGAGTTTTTACATGAACTTTGTGATAC 341 Query 301 TCTTCGTCAAGTTATTTAGACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 360 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TCTTCGTCAAGTTATTTAAACGTAAACCCCATAAAGTGTACAAATGGGAGGCCATGCAAG 401 Query 361 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 AAGATGTTGAGGTTGGACCCGATAACTACCCAATGGTTCTTATCCAAATACCAATGTACA 461 Query 421 ATGAAAAAGAGGTCTTTC-AATTATCTATAGC-GGCAATATGTAGTT-TGGTCTGGCCAC 477 ||||||||||||| | | | ||| |||| | | ||| || || ||| | Sbjct 462 ATGAAAAAGAGGT-ATACGCA-TATATATA-CTACCTTTAT-TAATTACACTCT-TTTAT 516 Query 478 CA-A--GCCG-CCTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAC 533 | | | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 TATATGGTTGATTTAGTAGTTCAAGTTGTAGATGATTCTACGGATCCGGCCGTAAGGGAA 576 Query 534 GGTGTGGACATAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 593 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 GGTGTGGACGTAGAGATTGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGG 636 Query 594 AGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGAAAGAAGCTCTTACGCATAGCTAC 653 |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| Sbjct 637 AGAGATAACAGGAACGGCTACAAAGCCGGAGCTATGAAAGAAGCTCTTACGCAGAGCTAC 696 Query 654 GTCAAGCAATGCGATTTCGTAGCAGTCTTCGATGCCGATTTCCAACCAGAGCCCGATTAC 713 |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 697 GTCAAGCAATGCGACTTCGTAGCAGTCTTCGATGCTGATTTCCAACCCGAGCCCGATTAT 756 Query 714 CTCATCCGCGCCGTCCCCTTT-CTTGTCCACAACCCTGACGTTGCTCTCGTTCAAGCCCG 772 ||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 757 CTCATCCGCGCTGT-CCCTTTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCG 815 Query 773 ATGGATATTTGTTAACGCGAACAAATGTTTGATGACGAGGATGCAAGAGATGTCTCTCAA 832 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 816 ATGGATATTTGTTAACGCGAACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAA 875 Query 833 CTATCATTTCAAGGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGATTTAA 892 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 876 CTATCATTTCAAAGTGGAACAAGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAA 935 Query 893 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 TGGAACCGCGGGTGTATGGAGAATATCGGCAATGGAAGCAGCAGGAGGATGGAAATCAAG 995 Query 953 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCACGGCTGGAAATTTGT 1012 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 996 GACCACAGTAGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCATGGCTGGAAATTTGT 1055 Query 1013 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTCAAGGCCTACAGATT 1072 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1056 CTACCTTAACGACCTCACGGTGAGAAACGAGCTTCCAAGCAAATTTAAGGCCTACAGATT 1115 Query 1073 CCAGCAACATAGGTGGTCCTGTGGCCCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1132 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1116 CCAGCAACATAGGTGGTCCTGTGGACCGGCGAATCTATTTAGAAAAATGACGATGGAGAT 1175 Query 1133 CATTCGT-AATAAGAGAGTATCAATATGGAAGAAGTTCTATGTGATCTACAGCTTTTTCT 1191 |||| | ||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1176 CATTT-TCAATAAGAGAGTATCAATTTGGAAGAAGTTTTATGTGATCTACAGCTTTTTCT 1234 Query 1192 TCGTAAGAAAAGTGGCAGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1251 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1235 TCGTAAGGAAAGTGGCGGTACACTTCTTGACATTCTTCTTCTACTGTATAATTGTGCCAA 1294 Query 1252 CAAGTGTCTTCTTCCCTGAAATCTACATCCCATCTTGGTCTACCATTTACATTCCCTCTT 1311 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1295 CAAGTGTCTTCTTCCCTGAAATCCACATCCCATCTTGGTCTACCATTTACGTTCCCTCTT 1354 Query 1312 TGATCACTATCTTCCACACCATGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGA 1371 |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1355 TGATCAGTATCTTCCACACCCTGGCAACTCCAAGATCCTTCTACCTCGTGATATTTTGGG 1414 Query 1372 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGAACGTGCATTGGCCTACTTG 1431 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1415 TCTTGTTCGAGAATGTAATGGCTATGCATCGAACCAAAGGTACGTGCATTGGCCTACTTG 1474 Query 1432 AAGGAGGAAGAGTGAACGAATGGGTTGTGACCGAAAAATTAGGAGATGCTTTAAAGAATA 1491 ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| || Sbjct 1475 AAGGAGGAAGAGTAAACGAATGGGTTGTGACCGAAAAACTAGGAGATGCTTTGAAGAGTA 1534 Query 1492 AGCTACTCTCGCAGGTCGTCCAAAGGAAATCTTGTTATGAGAGAGTGAATTCAAAGGAAG 1551 |||||||||| | ||| |||||||| |||||||||||| | ||||||||||| ||||||| Sbjct 1535 AGCTACTCTCTCGGGTAGTCCAAAGAAAATCTTGTTATCAAAGAGTGAATTCCAAGGAAG 1594 Query 1552 TGATGGTGGGGGTGTACATATTAGGATGTGCACTCTATGGCCTGATCTATGGCCACACAT 1611 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1595 TGATGGTGGGGGTATACATATTAGGATGTGCACTCTATGGCCTGATCTATGGGCACACAT 1654 Query 1612 GGTTACATTTCTATCTTTTTCTTCAGGCCACGGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1671 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1655 GGTTACATTTCTATCTTTTTCTTCAGGCCACAGCCTTTTTCGTCTCCGGTTTTGGTTTTG 1714 Query 1672 TTGGAACCTAATAAGAACCTTCCCGGCCCAT 1702 | ||||||||| ||||||||||||||||| Sbjct 1715 TCGGAACCTAA---GAACCTTCCCGGCCCAT 1742 > AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-like A10 | chr1:8516238-8519734 REVERSE LENGTH=1858 Length=1858 Score = 898 bits (486), Expect = 0.0 Identities = 1135/1442 (79%), Gaps = 69/1442 (5%) Strand=Plus/Plus Query 222 TTCAAGGGTTTGGTGG-TTATGTGTTTGGT--TCTATCTATTATAGTGTTCTTCGAGAGT 278 |||||| ||||||||| || | |||||| | ||| || | |||| ||| | ||| || Sbjct 196 TTCAAGTGTTTGGTGGCTT-TTTGTTTGATAATCTCCCT-CT-TAGTTTTCATAGAGGGT 252 Query 279 TTTTACATGAACTTTGTGA-TACTCTTCGTCAAGTTATTTAGA-CGTAAACCCCATAAAG 336 | ||||||||| |||| | |||||| ||||||| | ||| || || |||||| | |||| Sbjct 253 ATATACATGAACCTTGT-AGTACTCTACGTCAAGGTGTTT-GAGCGAAAACCCGAAAAAG 310 Query 337 TGTACAAATGGGAGGCCATGCAAGAAGATGTTGAGGTTGGACCCGATAA-CTACCCAATG 395 | || | ||||||||| |||||||| || ||||| |||||| || || |||||| ||| Sbjct 311 TTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTTGGACATGA-AACCTACCCCATG 369 Query 396 GTTCTTATCCAAATACCAATGTACAATGAAAAAGAGGTCTTTCAATTATCTATAGCG-GC 454 || ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||| | || Sbjct 370 GTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTCCTTCAATTATCTATAG-GTGC 428 Query 455 AATATGTAGTTTGGTCTGGCCACCAAG-CCGCCTAGTAGTTCAAGTTGTAGATGATTCTA 513 |||||| | | |||||| | ||||||| | ||||||||| |||||||||| | Sbjct 429 TGCATGTAGACTAATATGGCCA-TTGGACCGCCTAATTGTTCAAGTTTTAGATGATTCCA 487 Query 514 CGGATCCGGCCGT-AAGGGACGGT-GTGGACATAGAGAT-TGCAAAATGGCAAAGCCAAG 570 | |||| || | || ||| | | ||| ||| |||| | |||||||||| ||||| ||| Sbjct 488 CTGATCAAACCATCAA-GGA-GCTGGTGAACACAGAG-TGTGCAAAATGGGAAAGCAAAG 544 Query 571 GCATAAACATAAGGTGTGAAAGGAGAGATAATAGGAACGGCTATAAAGCTGGAGCTATGA 630 | |||| |||| |||||| |||||||| || || || ||||| ||||| |||||| | | Sbjct 545 GTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTA 604 Query 631 AAGAA-GCTCTTACGCATAGCTACGTCAAGCAATGCGATT-TCGTAG-CAGTCTTCGATG 687 ||||| || | | ||| | |||||| |||| |||| ||| | || | || ||||||| | Sbjct 605 AAGAAGGC-ATGAAGCACAACTACGTGAAGCTATGCAATTAT-GTCGTCA-TCTTCGACG 661 Query 688 CCGATTTCCAACCAGAGCCCGATTACCT-CATCCGCGCCGTCCCCTTTCTTGTCCACAAC 746 | || |||||||| ||||| |||||||| || | | | |||||||| || || || ||| Sbjct 662 CAGACTTCCAACCGGAGCCTGATTACCTCCA-ACACTCTGTCCCCTTCCTCGTTCATAAC 720 Query 747 CCTGACGTTGCTCTCGTTCAAGCCCGATGGATATTTGTTAACGCGAACAAATGTTTGATG 806 || || || ||||| |||||||||||||||| ||| | ||||| ||||| || |||||| Sbjct 721 CCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATG 780 Query 807 ACGAGGATGCAAGAGATGTCTCTCAACTATCA-TTTCAAGGTGGAACAAGAATCAGGGTC 865 |||||||||||||||||||| |||||||| || ||| | || || |||||||| || || Sbjct 781 ACGAGGATGCAAGAGATGTCCCTCAACTACCACTTT-ATGGCAGAGCAAGAATCTGGATC 839 Query 866 GACTAGACATGCTTTCTTCGGATTTAATGGAACCGCGGGTGTATGGAGAATATCGGCAAT 925 ||||||||||| ||||| | || |||||||| ||||||||||||||||| | || || Sbjct 840 CACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGAT 899 Query 926 GGAAGCAGCAGGAGGATGGAAATCA-AGGACCACAGTAGAGGACATGGACTTGGCTGTTC 984 ||||| ||| ||||||||| || | |||| || |||||||||||||||||||| |||| Sbjct 900 GGAAGAAGCTGGAGGATGG-CATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTC 958 Query 985 GTGTTGGTCTTCACGGCTGGAAATTTGTCTACCTTAACGACCTCACGGTGAGAAA-CGAG 1043 ||| |||||||| ||||||||||||||||| || || ||||||||||||| ||| |||| Sbjct 959 GTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACGGTGA-AAAGCGAG 1017 Query 1044 CTT-CCAAGCAAATTCAAGGCCTACAGATTCCAGCAACATAGGTGGTCCTGTGGCCCGGC 1102 || |||||||| || ||||||| ||||||||||||||| | ||||| ||||| || || Sbjct 1018 -TTACCAAGCAAGTTTAAGGCCTTTAGATTCCAGCAACATCGATGGTCTTGTGGTCCAGC 1076 Query 1103 GAATCTATTTAGAAAAATGACGATGGAGATCATTCGTAATAAGAGAGT-ATCAATATGGA 1161 ||||| || || ||||||| |||||||| ||||| ||||||||||| | | || |||| Sbjct 1077 TAATCTCTTCAGGAAAATGATTATGGAGATTATTCGCAATAAGAGAGTGA-CGATTTGGA 1135 Query 1162 AGAAGTTCTATGTGATCTACAGCTT-TTTCTTCGTA-AGAAAAGTGGCAGTACACTTCTT 1219 ||||||| ||| || |||||||||| ||| ||| || ||| | | ||| |||| ||| Sbjct 1136 AGAAGTTGTATCTGGTCTACAGCTTCTTT-TTCTTACGGAAGA-TCATAGTCCACTGCTT 1193 Query 1220 GACATTCT-TCTTCTACTGTATAATTGTGCCAACAAGTGTCTTC-TTCCCTGAAATCTAC 1277 || || | | ||||||||| | ||| | || |||||||||||| ||||| ||| || || Sbjct 1194 CAC-TTTTATTTTCTACTGTGTTATTCTTCCTACAAGTGTCTTCTTTCCC-GAAGTCAAC 1251 Query 1278 ATCCCATCTTGGTCTACCATTTACATTCCCTCTTTGATCACTATCTTCCA-CACCATGGC 1336 || ||| ||||||| || |||||||||||||| |||||||| || | || ||| || Sbjct 1252 ATTCCAGCTTGGTCAACTTTTTACATTCCCTCTATGATCACTCTC-TGCATTGTCATTGC 1310 Query 1337 AACTCCAAGATCCTTCTACCTCGTGATATTTTGGATCTTGTTCGAGAATGTAATGGCTAT 1396 || |||||||| ||||||||||||||||||||||||||||| || || |||||| |||| Sbjct 1311 GACACCAAGATCATTCTACCTCGTGATATTTTGGATCTTGTTTGAAAACGTAATGTCTAT 1370 Query 1397 GCATCGAACCAAAGGAACGTGCATTGGCCTACTTGAAGGAGGAAGAGTGAACGAATGGGT 1456 ||| || || |||||||| | ||| ||| |||| ||| || |||||||||||||||||| Sbjct 1371 GCACCGGACAAAAGGAACTTTCATCGGCATACTCGAAAGACAAAGAGTGAACGAATGGGT 1430 Query 1457 TGTGACCGAAAAATTAGGAGATGCT-TTAAAGAATAAGCTACTCTCGC-AGG-TCGTCCA 1513 ||| || || ||||||||||||||| |||| || ||||||||| || | ||| | | | Sbjct 1431 TGTCACTGAGAAATTAGGAGATGCTCTTAA-GACTAAGCTACT-TC-CTAGGATTGGAAA 1487 Query 1514 A---AGGAA-ATCTTGT-TATGAGAGAGTGAATTCAAAGGA-AGTGATGGTGGGGGTGTA 1567 | || || || || | | ||| ||||| || || ||||| | | ||||||||| | || Sbjct 1488 ACCTAGTAACATGTT-TCT-TGAAAGAGTAAACTCCAAGGAGA-TAATGGTGGGGATATA 1544 Query 1568 CATATTAG-GATGTGCACT-CTATGGCCTGATCTATGGCCACACATGGTTACATTTCTAT 1625 ||| || | | ||||| | |||||| || ||| ||| |||||| |||| || ||||| Sbjct 1545 CATCTT-GTGTTGTGCT-TGCTATGGACTTTTCTTTGGGAACACATTGTTATATCTCTAT 1602 Query 1626 CT 1627 || Sbjct 1603 CT 1604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84136113420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5