BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946589 Length=1542 Score E Sequences producing significant alignments: (Bits) Value AT4G16563.1 | Symbols: | Eukaryotic aspartyl protease family p... 2466 0.0 > AT4G16563.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr4:9329657-9331523 REVERSE LENGTH=1867 Length=1867 Score = 2466 bits (1335), Expect = 0.0 Identities = 1482/1552 (95%), Gaps = 14/1552 (1%) Strand=Plus/Plus Query 1 CTCCACTGTTTTATCATCCGCCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 60 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 70 CTCCACTGTTTTATTATCCACCATGAAAACTTGTTTGATCTTCTTCCTCTACACAACAAT 129 Query 61 TCT-CAATTACTGTTTCTACTTCTCTGT-T--TCATCATCAACAcctcttctactacc-t 115 ||| ||| |||| |||| |||||||||| | |||| ||||||||||||||| || || | Sbjct 130 TCTCCAA-TACTATTTCCACTTCTCTGTGTCATCATTATCAACACCTCTTCTCCT-CCAT 187 Query 116 ctctctcactctctctcaacctcaaaacactcttcatctcctctccaccttctcaaatca 175 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 CTCTCCCACTCTCTCTCAACCTCAAAACACTCTTCATCTCCTCTCCACCTTCTCAAATCA 247 Query 176 tcctcctccCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAAC-AC--CAACAACAA 232 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 248 TCCTCCTCCCGTTCCTCCGCCCGCTTCCGCCGCCACCACCACAAACAACAACAACAACAA 307 Query 233 CTTTCACTCCCTATctcctccggcagcgattacctcatctccctctccgtcggctcctcc 292 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 308 CTTTCACTCCCTATCTCCTCCGGCAGCGATTATCTCATCTCCCTCTCCGTCGGCTCCTCC 367 Query 293 tcctcagccgtctccctcTACTTAGACACCGGAAGCGACCTCGTCTGGTTCCCTTGCCGT 352 ||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 368 TCCTCAGCCGTCTCCTTGTACTTGGACACCGGAAGCGACCTCGTTTGGTTCCCTTGCCGT 427 Query 353 CCTTTCACTTGCATCCTCTGTGAATCCAAACCActccctccttctcctccaccctctctc 412 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 428 CCTTTCACTTGCATCCTCTGTGAATCCAAACCACTCCCTCCTTCTCCTCCTTCATCTCTC 487 Query 413 tcctcctccgccaccaccgtctcctgctcctccccttcttgctccgccgctcactctTCC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TCCTCCTCCGCCACCACCGTCTCCTGCTCCTCCCCTTCTTGCTCCGCCGCTCACTCTTCC 547 Query 473 CTTCCTTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTACATCGAAACCGGT 532 ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 548 CTTCCCTCCTCCGACCTCTGCGCTATCTCCAACTGTCCTCTTGATTTCATCGAAACCGGA 607 Query 533 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGctct 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 GATTGCAACACTTCTTCTTACCCTTGTCCTCCTTTCTACTACGCTTACGGTGACGGCTCT 667 Query 593 ctcgtcgcaaaactcttctccgactcactctctctcccttccgtctccGTCGCTAACTTC 652 |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 668 CTCGTCGCAAAACTCTACTCCGACTCACTCTCTCTCCCTTCCGTCTCCGTCTCTAACTTC 727 Query 653 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 728 ACCTTCGGCTGCGCTCACACCACTCTCGCTGAACCTATCGGCGTCGCTGGATTCGGCCGT 787 Query 713 GGACGtctctctcttcccgctcagctctctgttcactctcctcatctcggtaacagcttc 772 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 788 GGACGTCTCTCTCTTCCCGCTCAGCTCGCTGTTCACTCTCCTCATCTCGGTAATAGCTTC 847 Query 773 tctTATTGTCTCGTCTCTCACTCGTTTGACTCAGACCGAGTCCGCCGTCCGAGTCCACTC 832 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 848 TCTTATTGTCTCGTCTCTCACTCTTTTGACTCGGACCGAGTCCGCCGTCCGAGTCCGCTC 907 Query 833 ATACTCGGCCGTTTCGTCGATAAAAAAGAGAAACGTGTTGCAACCACCgatgatgatgat 892 || ||||| || |||||||||||||||||||||||||| | ||||||||||||| ||||| Sbjct 908 ATCCTCGGTCGCTTCGTCGATAAAAAAGAGAAACGTGTCGGAACCACCGATGATCATGAT 967 Query 893 gatggtgatga-GACGAAGAAGAAGAAGAATGAATTCGTCTTCACCGAGATGCTTGAAAA 951 || |||||||| || |||||||||||| ||||| ||||||||||| |||||||||||||| Sbjct 968 GACGGTGATGATGA-GAAGAAGAAGAAAAATGAGTTCGTCTTCACAGAGATGCTTGAAAA 1026 Query 952 CCCAAAGCATCCTTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1011 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1027 CCCAAAGCATCCCTACTTCTACTCTGTTTCACTCCAAGGAATCTCAATCGGAAAACGGAA 1086 Query 1012 TATTCCTGCTCCGGCGATGCTCAGACGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1071 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1087 TATTCCAGCTCCGGCGATGCTCAGAAGAATTGACAAAAACGGTGGCGGAGGAGTTGTTGT 1146 Query 1072 TGACTCAGGGACGACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1131 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1147 TGACTCAGGGACAACGTTCACGATGCTTCCGGCGAAATTCTACAATTCGGTGGTTGAAGA 1206 Query 1132 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 ATTCGATAGTCGGGTCGGGCGGGTTCACGAACGGGCTGATCGGGTCGAACCGAGTTCGGG 1266 Query 1192 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 TATGAGTCCTTGTTACTATTTAAACCAGACGGTTAAAGTTCCAGCTCTGGTTTTGCATTT 1326 Query 1252 TGCCGGGAATGGATCCAGTGTTACGCTCCCTAGGAGAAATTATTTTTATGAATTTATGGA 1311 ||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 1327 TGCCGGGAACAGATCCAGTGTGACGCTCCCCAGGAGAAATTATTTTTACGAATTTATGGA 1386 Query 1312 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAGTTGGATGTTTGATGTTGATGAACGGTGG 1371 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1387 CGGTGGAGATGGTAAAGAAGAGAAGAGGAAAATTGGATGTTTGATGTTGATGAACGGTGG 1446 Query 1372 AGATGAATCGGAGCTTCGAGGTGGGACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1431 ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1447 AGATGAATCAGAACTTCGAGGTGGTACTGGGGCTATTCTGGGGAATTACCAGCAACAAGG 1506 Query 1432 GTTTGAGGTGGTCTATGATCTGTTGAACAGAAGAGTTGG-TTTCGCAAAGAGGAAATGCG 1490 |||||||||||| |||||||||||||||||||||||||| ||| || |||||||| |||| Sbjct 1507 GTTTGAGGTGGTTTATGATCTGTTGAACAGAAGAGTTGGGTTT-GCTAAGAGGAAGTGCG 1565 Query 1491 CATCTTTATGGGATACGCTTAACCAGGGCTAACATGCGCTGAAGCCAATAAA 1542 |||||||||||||| ||||||| | | |||||||||||||||||||||||| Sbjct 1566 CATCTTTATGGGATTCGCTTAAATAAGCCTAACATGCGCTGAAGCCAATAAA 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76104026220 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5