BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946655
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16190.1 | Symbols: | Papain family cysteine protease | chr... 1893 0.0
> AT4G16190.1 | Symbols: | Papain family cysteine protease | chr4:9171467-9173105
FORWARD LENGTH=1395
Length=1395
Score = 1893 bits (1025), Expect = 0.0
Identities = 1119/1165 (96%), Gaps = 3/1165 (0%)
Strand=Plus/Plus
Query 1 TCTCTCGGAAACCCAAGAAGAATGGATCGTGTGGTCTTCTTCTTCCTCATCGCAGCCACG 60
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 26 TCTCTTGGAAA-CCAAGAAGCATGGATCGTGTGGTCTTCTTCTTCCTCATCGCAGCTACG 84
Query 61 TTACTAGCAGTTTCTCTCGGATCCGCCGTCATCTCCGGCGAGGTAAACGACGGTTTCGTT 120
|||||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 85 TTACTAGCAGGTTCTCTCGGATCTACCGTCATCTCCGGCGAGGTTACCGACGGTTTCGTT 144
Query 121 AACCCGATCAGGCAAGTCGTCCCGGAGGAGAACGATGAACATCTCCTCAACGCAGAACAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 145 AACCCGATCAGGCAAGTCGTCCCGGAGGAGAACGATGAACAACTCCTCAACGCAGAACAT 204
Query 181 CACTTCTCTCTATTCAAATCCAAGTACGAGAAGACTTACGCGACTCAGGAAGAGCACGAT 240
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 205 CACTTCACTCTATTCAAATCCAAGTACGAGAAGACTTACGCGACTCAGGTAGAGCACGAT 264
Query 241 CATCGGTTCCGTGTCTTCAAAGCTAACCTAAAG-CGAGCTAGGCGGAACCAGCTTCTAGA 299
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 265 CATCGGTTCCGTGTCTTCAAAGCTAACCT-AAGACGAGCTAGGCGTAACCAGCTTCTAGA 323
Query 300 TCCGTCTGCTGTCCACGGCGTCACGCAGTTCTCAGATCTTACTCCGAAAGAATTCCGCCG 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCCGTCTGCCGTCCACGGCGTCACGCAGTTCTCAGATCTTACTCCGAAAGAATTCCGCCG 383
Query 360 CAAGTTTTTAGGGCTGAAACGCCGAGGGTTTCGTCTTCCTACTGATACTCAGACGGCGCC 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CAAGTTTTTAGGACTGAAACGCCGAGGGTTTCGTCTTCCTACTGATACTCAGACGGCGCC 443
Query 420 GATTCTTCCGACTAGCGATCTTCCGACGGAGTTCGATTGGCGTGAGCAAGGAGCCGTCAC 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 444 TATTCTTCCGACTAGCGATCTTCCGACGGAGTTCGATTGGCGTGAACAAGGAGCCGTCAC 503
Query 480 ACCTGTTAAAAACCAGGGTATGTGTGGTTCATGCTGGTCTTTTAGTGCTATTGGAGCTCT 539
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 504 ACCTGTTAAAAACCAGGGTATGTGTGGTTCATGCTGGTCATTTAGTGCGATAGGAGCTCT 563
Query 540 TGAAGGAGCACATTTTCTAGCGACTAAAGAGCTTGTTAGCCTCAGTGAGCAGCAGCTTGT 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 564 TGAAGGAGCACATTTTCTAGCCACTAAAGAGCTTGTTAGCCTCAGTGAGCAGCAGCTCGT 623
Query 600 AGATTGTGACCATGAGTGTGATCCAGCACAAGCCAATTCATGTGACTCTGGTTGCAGTGG 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 624 AGATTGTGACCATGAGTGTGATCCAGCACAAGCCAATTCATGTGATTCTGGTTGCAGTGG 683
Query 660 AGGACTAATGAACAATGCTTTTGAGTACGCTCTCAAAGCTGGTGGTCTTATGAAGGAAGA 719
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 684 AGGACTAATGAACAACGCTTTTGAGTACGCTCTTAAAGCTGGTGGTCTAATGAAGGAAGA 743
Query 720 AGACTATCCTTATACAGGACGTGACAATACCGCTTGCAAATTCGACAAGAGCAAGATTGC 779
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 744 GGACTATCCTTATACAGGACGTGACCATACCGCTTGTAAGTTCGACAAGAGCAAGATTGT 803
Query 780 TGCGAGCGTTTCTAATTTCAGCGTTGTCTCTTCAGATGAAGACCAAATCGCTGCTAATCT 839
|||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 804 TGCGAGTGTGTCTAACTTCAGCGTTGTCTCTTCGGATGAAGACCAAATCGCTGCTAATCT 863
Query 840 AGTCAAGCACGGACCTCTAGCTATTGCTATCAATGCGATGTGGATGCAAACATACATAGG 899
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGTCCAGCATGGACCTCTAGCTATTGCTATCAATGCGATGTGGATGCAAACATACATAGG 923
Query 900 AGGAGTCTCGTGTCCATATGTATGTTCAAAGAGCCAAGACCATGGAGTGCTCTTGGTTGG 959
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 AGGAGTCTCGTGCCCGTATGTATGTTCAAAGAGCCAAGACCATGGAGTGCTCTTGGTTGG 983
Query 960 ATTTGGTTCATCGGGTTATGCGCCAATCCGTCTTAAGGAGAAGCCTTATTGGATTATTAA 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 984 ATTTGGTTCATCGGGTTATGCACCAATCCGTCTTAAGGAGAAGCCTTATTGGATTATCAA 1043
Query 1020 GAACTCGTGGGGAGCGATGTGGGGAGAGCATGGTTACTACAAAATCTGCAGAGGACCTCA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1044 GAACTCGTGGGGAGCGATGTGGGGAGAGCATGGTTACTACAAAATCTGCAGAGGGCCTCA 1103
Query 1080 TAATATGTGTGGTATGGACACAATGGTATCTACTGTTGCTGCTGTTCATACCTCACCCAA 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TAATATGTGTGGTATGGATACAATGGTATCTACTGTTGCTGCTGTTCATACCTCACCCAA 1163
Query 1140 GTAGAATTATTAGGACACTACTTGT 1164
||||||||||||||||||||| |||
Sbjct 1164 GTAGAATTATTAGGACACTACCTGT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5