BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946674
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16100.1 | Symbols: | Protein of unknown function (DUF789) ... 1755 0.0
> AT4G16100.1 | Symbols: | Protein of unknown function (DUF789)
| chr4:9105720-9108159 FORWARD LENGTH=1447
Length=1447
Score = 1755 bits (950), Expect = 0.0
Identities = 1145/1235 (93%), Gaps = 29/1235 (2%)
Strand=Plus/Plus
Query 1 TCCATCGCCGGCCTGTAGAAATGTCGACTACCCGTAGGATCCGCGGCGAGAATCGGTTTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCCATCGCCGGCCTGTACAAATGTCGACTACCCGTAGGATCCGCGGCGAGAATCGGTTTT 129
Query 61 ATAACCCTCCTCCGATGAGAAAACTTCAACAGGAGCGTGAGAAGAAGAGACTTGAATCGG 120
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 130 ATAACCCACCTCCGATGAGAAAACTTCAACAAGAGCGTGAGAAGAAGAGACTTGAAGCGG 189
Query 121 AGGAG---GAG--A-AGATG-AG--GGCCAAGGAGATGCTCGATCGTAAGATTAAAG-CG 170
||||| ||| | ||| | || ||| |||||||| |||||||| |||||||||| |
Sbjct 190 AGGAGATAGAGAAAGAGAAGAAGAAGGCAAAGGAGATTCTCGATCGAAAGATTAAAGTC- 248
Query 171 GAGGAGAAGGAGATGAATCAACCTGAAGAAGAGTGCTCGACCTCCGATTGTTCTTTGCCG 230
|||||||||||||| || ||||||| || |||||||||||||||||||| ||| |||||
Sbjct 249 GAGGAGAAGGAGATTAAGCAACCTG-AG--GAGTGCTCGACCTCCGATTGCTCTGTGCCG 305
Query 231 AGTCGGG--T-CT---CCACCACCACCACCGG-A--ACTTCTTCCAATTTGGGCCGGTTT 281
||||||| | || |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 306 AGTCGGGTCTCCTCCACCACCACCACCACCGGAACTACTTCTTCCAATTTGGGCCGGTTT 365
Query 282 CTGGATTGCACCACTCCCGTTGTTTCTACCCAGTACTTGCCTTTGACAAGCATTAAGGGG 341
||||||||||||||||| |||||||||| ||| |||||||||||||||| | |||||||
Sbjct 366 CTGGATTGCACCACTCCAATTGTTTCTACGCAGCACTTGCCTTTGACAAGTAGTAAGGGG 425
Query 342 TGGAGAACTCGTGAACCAGAGTACTGTCCCTATTTCTTGTTGAATGATTTGTGGGATTCG 401
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 426 TGGAGAACTCGTGAACCAGAGTACCGTCCCTATTTCTTGCTGAATGATTTGTGGGATTCA 485
Query 402 TTTGAGGAGTGGAGCGCTTACGGTGTCGGGGTTCCTCTTCTTTTAAATGGGAAT-GATTC 460
|||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 486 TTTGAGGAATGGAGCGCCTACGGTGTCGGGGTTCCTCTTCTTTTAAATGGG-ATCGATTC 544
Query 461 GGTTGTTCAGTATTATGTTCCTTATCTCTCTGGAATTCAGCTTTATGAAGATCCATCCAG 520
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 545 GGTTGTTCAGTATTATGTTCCTTATCTCTCTGGTATTCAGCTTTATGAAGACCCATCTAG 604
Query 521 AGCCTGCACAAGTAGGAGGAGAGTTGGTGAAGAAAGTGATGGTGATTCGCCTAGATACAT 580
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 605 AGCCTGCACAACTAGGAGGAGAGTTGGTGAAGAAAGTGATGGTGATTCGCCTAGAGACAT 664
Query 581 GAGTAGCGATGGCAGCAATGACTGTAGAGACCTTTCTCGGAGTTTATACAGAGCCTCTTT 640
|||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 665 GAGTAGCGATGGGAGCAATGACTGTAGAGAGCTTTCTCAAAATTTATACAGAGCCTCTTT 724
Query 641 GCAGGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAACTCTCC 700
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GGAAGAGAAACCTTGCATTGGTTCATCGAGTGATGAGAGTGAGGCCAGCAGTAACTCTCC 784
Query 701 TGGTGACCTTATCTTTGAGTATCTTGAAGCTGCTATGCCATTTGGCCGTGAACCATTGAC 760
|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 785 TGGTGAACTTGTCTTTGAGTATCTTGAGGGTGCTATGCCATTTGGCCGTGAACCATTGAC 844
Query 761 CGACAAGATCACAAACCTGTCATCGCAATTCCCAGCACTCAGAACATACAGGAGCTGTGA 820
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 845 CGACAAGATCTCAAACCTGTCATCACAATTCCCAGCACTCAGAACATACAGAAGCTGTGA 904
Query 821 TCTATCACCTTCGAGTTGGGTCTCTGTTGCTTGGTACCCAATATACCGAATACCATTAGG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TCTATCACCTTCGAGTTGGGTCTCTGTTGCTTGGTACCCAATATACCGAATACCATTAGG 964
Query 881 TCAATCGTTACAAAACCTCGACGCTTGCTTTTTAACATTCCACTCCTTGTCAACCCCCTG 940
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 965 TCAATCGTTACAAAACCTCGATGCTTGCTTTTTAACATTCCACTCGTTGTCAACACCCTG 1024
Query 941 TCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGCTGCATCGTTGAA 1000
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1025 TCGAGGTACAAGCAATGAGGAAGGTCAAAGCTCAAGCAAATCGGTTGC---ATCGGCGAA 1081
Query 1001 GCTTCCTTTACCTACTTTTGGACTCGCGTCCTACAAGTTTAAACTGTCAGTATGGAGCCC 1060
|||||| || || ||||| || ||||| |||||||||||||||||||||| |||||||||
Sbjct 1082 GCTTCCATTGCCCACTTTCGGTCTCGCATCCTACAAGTTTAAACTGTCAGAATGGAGCCC 1141
Query 1061 AGAGGGTGACGTAGACGAGAACCAGAGAGTTGGAACGCTGCTACGAACAGCTGAAGAGTG 1120
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1142 AGAGAGTGACGTAGACGAGAACCAGAGAGTCGGGACGCTGCTACGAACAGCTGAAGAGTG 1201
Query 1121 GCTCAGGCGGTTGAAGGTAACTCTGCCGGACTTTAGACACTTCATATCGCATAGTGGTTC 1180
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1202 GCTCAGGCGGTTGAAGGTGATTCTACCGGACTTTAGACACTTCATATCGCATAGTGGTTC 1261
Query 1181 GGCATGGAGATGATGATATTTAGAGTCATTT-CTA 1214
||| ||||||||||||||||||||||||||| |||
Sbjct 1262 GGCGTGGAGATGATGATATTTAGAGTCATTTTCTA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5