BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946685

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16008.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   409    8e-114


> AT4G16008.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9067830-9068512 
FORWARD LENGTH=683
Length=683

 Score =  409 bits (221),  Expect = 8e-114
 Identities = 263/283 (93%), Gaps = 3/283 (1%)
 Strand=Plus/Plus

Query  1    CTCCTTCACTCACTCTTTCTACTACCATGGAATTTTCTCGAAAGG---ACCGGCATGTGA  57
            ||||| ||||| |||||||||||||||||||| ||||||||||||   |||| |||||||
Sbjct  43   CTCCTCCACTCGCTCTTTCTACTACCATGGAACTTTCTCGAAAGGACCACCGTCATGTGA  102

Query  58   TGATTGCAGAAGATGGGTCAAAAAAGCTCAACAGAAACACTTCCATGTCAAATCCTAATC  117
            |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct  103  TGATTGCAGAAGATGGGTCACAAAACCTCAACAGAAACACTTCCAAGTCAAATCCTAATC  162

Query  118  TTCCTTATCCTTATAACCCCAACCTCTCTTCTCTCTATACCCATAATAGTTTTTACATCT  177
            |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct  163  TTCCTTATCCTTATAACCCCAACCCCTCTTCTCTCTATACACATAATAGTTTCTACATCT  222

Query  178  ACCACGGTCCACAAGTTCGTACGGTCAAAGAGTCCATAAGATCTTCCACCAATGCAACTT  237
            |||||||||||||||||||||| |||||||||||||||| |||||||||||||||  |||
Sbjct  223  ACCACGGTCCACAAGTTCGTACCGTCAAAGAGTCCATAATATCTTCCACCAATGCTTCTT  282

Query  238  TTTTGGTCTATCAATCCGACTAGCTAGTTCAATCCATGTAAAA  280
            ||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct  283  TTTTGGTCTATCAATCCAACTAGTTAGTTCAATCCATTTAAAA  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5