BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946685 Length=280 Score E Sequences producing significant alignments: (Bits) Value AT4G16008.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 409 8e-114 > AT4G16008.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9067830-9068512 FORWARD LENGTH=683 Length=683 Score = 409 bits (221), Expect = 8e-114 Identities = 263/283 (93%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 1 CTCCTTCACTCACTCTTTCTACTACCATGGAATTTTCTCGAAAGG---ACCGGCATGTGA 57 ||||| ||||| |||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 43 CTCCTCCACTCGCTCTTTCTACTACCATGGAACTTTCTCGAAAGGACCACCGTCATGTGA 102 Query 58 TGATTGCAGAAGATGGGTCAAAAAAGCTCAACAGAAACACTTCCATGTCAAATCCTAATC 117 |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| Sbjct 103 TGATTGCAGAAGATGGGTCACAAAACCTCAACAGAAACACTTCCAAGTCAAATCCTAATC 162 Query 118 TTCCTTATCCTTATAACCCCAACCTCTCTTCTCTCTATACCCATAATAGTTTTTACATCT 177 |||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 163 TTCCTTATCCTTATAACCCCAACCCCTCTTCTCTCTATACACATAATAGTTTCTACATCT 222 Query 178 ACCACGGTCCACAAGTTCGTACGGTCAAAGAGTCCATAAGATCTTCCACCAATGCAACTT 237 |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 223 ACCACGGTCCACAAGTTCGTACCGTCAAAGAGTCCATAATATCTTCCACCAATGCTTCTT 282 Query 238 TTTTGGTCTATCAATCCGACTAGCTAGTTCAATCCATGTAAAA 280 ||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 283 TTTTGGTCTATCAATCCAACTAGTTAGTTCAATCCATTTAAAA 325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12868543744 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5