BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946720 Length=709 Score E Sequences producing significant alignments: (Bits) Value AT4G15780.1 | Symbols: ATVAMP724, VAMP724 | vesicle-associated ... 1142 0.0 > AT4G15780.1 | Symbols: ATVAMP724, VAMP724 | vesicle-associated membrane protein 724 | chr4:8979889-8981768 REVERSE LENGTH=932 Length=932 Score = 1142 bits (618), Expect = 0.0 Identities = 676/704 (96%), Gaps = 3/704 (0%) Strand=Plus/Plus Query 2 ATACTCGGTGGCGACTC-AAATGGGTCAAGAATCGTTTATCTACAGCTTCGTCGCCAGAG 60 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 52 ATACTCGGTGGCGACTCAAAATGGGTCAAGAATCGTTTATCTATAGCTTCGTCGCCAGAG 111 Query 61 GCACTATGATCCTCGCCGAGTATACCGAATTCACCGGCAATTTCCCGTCTATTGCTGCTC 120 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 112 GAACTATGATCCTCGCCGAGTATACCGAATTCACAGGCAATTTCCCGTCTATTGCTGCTC 171 Query 121 AGTGTCTCCAGAAGCTTCCTTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 172 AGTGTCTCCAGAAGCTTCCGTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 231 Query 181 ATACCTTCAATTTCCTCGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 240 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ATACCTTCAATTTCCTTGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 291 Query 241 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGT-AAGGGCTGATTTCAAGAAGAGA 299 ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| Sbjct 292 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGTGAAAG-CTGATTTCAAGAAGAGA 350 Query 300 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTAAACAAGGAATTCGGGCCG 359 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 351 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTCAACAAGGAGTTCGGGCCG 410 Query 360 GTGATGAAGGAACACATGAATTATATTGTAGACCATGCAGAGGAAATTGAAAAACTAATA 419 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 411 GTGATGAAGGAACACATGAATTATATTGTTGACCATGCAGAGGAGATTGAAAAACTAATA 470 Query 420 AAAGTCAAGGCTCAAGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCG 479 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 AAAGTCAAGGCTCAGGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCA 530 Query 480 ATCGACAGAGGGGAAAATCTAACGGTTCTTACTGACAAAACCGAGAATCTACGCTCTCAG 539 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 531 ATCGACAGAGGGGAAAATCTAACAGTTCTTACTGACAAGACCGAGAATCTACGCTCTCAG 590 Query 540 GCACAGGAGTACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 599 || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 GCGCGGGAATACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 650 Query 600 AAGATAAAACTTGTGGTTCTCGGGATCTTGCTACTATTTGTTCTCATAATCTGGATATCG 659 ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 651 AAGATAAAACTGGTGGTTCTTGGGATCTTGCTACTACTTGTTCTCATAATCTGGATATCG 710 Query 660 GTTTGTCACGGGTTCAATTGCACGGATTGAAGATGCAACAAATT 703 |||||||| || || |||||||||||||||||| ||||||||| Sbjct 711 GTTTGTCATGGATTTAATTGCACGGATTGAAGACACAACAAATT 754 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34360156548 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5