BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946917
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14605.1 | Symbols: | Mitochondrial transcription terminati... 2204 0.0
> AT4G14605.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:8378429-8380714 FORWARD LENGTH=1787
Length=1787
Score = 2204 bits (1193), Expect = 0.0
Identities = 1415/1521 (93%), Gaps = 19/1521 (1%)
Strand=Plus/Plus
Query 21 AATGCAAAGTCTTAGTCAAATTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 80
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 155 AATGCAAAGTCTTAGTCAACTTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 214
Query 81 ACCCAGTACTAGCTTAGTTATTACCAGGGCACAGCTTTGGTTCACAGGAAGATTGTCTTT 140
||||||||| | || | |||||||||||||| || |||||| | |||||
Sbjct 215 ACCCAGTAC--G---AG--------A--GCACAGCTTTGGTTTACGGGAAGACTCTCTTT 259
Query 141 TCGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCGAGACCTGT 200
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 260 TAGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCAAGACCTGT 319
Query 201 ACCTCCTAATCTGATTGCTGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 260
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACCTCCAAATCTGATCGCAGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 379
Query 261 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGCTTAATCAATAAATCTGATCAATT 320
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 380 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGGTTAATCAACAAATCCGATCTATT 439
Query 321 CATTGATCATTTAGTCTCTAGACTTCATTCTGTTCATAAAGCACGGTATCTCGTAGGAAG 380
|||||| |||||||| || || || ||||||||||||||||| || || |||||||||||
Sbjct 440 CATTGACCATTTAGTGTCCAGGCTCCATTCTGTTCATAAAGCTCGATACCTCGTAGGAAG 499
Query 381 AGAGCTTACTACACTTGAGATTCGAGATTCTCTTATTCCTTATCTCGAAGAACTTCATGA 440
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 500 AGAGCTTACTACACTTGAGATTCGAGATTCTCTCATTCCTTACCTCGAACAACTTCATGA 559
Query 441 AGAACACGGTGATCTTCTCTCTGAGCTTGTTGTGAGCTACCCTGATCCACCAGCTGAGA- 499
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 560 AGAACATGGTGATCTTCTCGCTGAGCTTGTTGTGAGCTTCCCTGATCCACCAGCTGA-AC 618
Query 500 CTAGACTTGTTGCTTCATCTTTAGTTCCTGTTTC-ACCGCCTCGTGGTGACACAGATTCT 558
|||||||||||||||||||| |||| ||| | | ||| |||||||||||||||||||||
Sbjct 619 CTAGACTTGTTGCTTCATCTCCAGTTTCTG-TCCTACCACCTCGTGGTGACACAGATTCT 677
Query 559 GCTGCAGAGACTCGGAAACTCAGAGCTGTGTCTCGGGTTAGTGAACTTGACCCAGAAGGT 618
|||||||| ||||| ||||||||||| |||||||| || || ||||||||| ||||||||
Sbjct 678 GCTGCAGACACTCGTAAACTCAGAGCGGTGTCTCGAGTCAGCGAACTTGACACAGAAGGT 737
Query 619 GCATTACGTCCTCAGACTCTTTACCTTCTTGACCTTGGTTTAAACTTAGAGCAGATCAAA 678
||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 738 GCATTACGTCCTCAGACCCTTTACCTTCTTGACCTCGGTTTAAACCTCGAGCAGATCAAA 797
Query 679 ACGATCACTCGTAAGTTTGCTGCTTTTCCTTATTACAGCCTCGACGGAAAAATCAAACCC 738
||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 798 ACGATCACTCGAAAGTTCGCTGCCTTTCCTTATTACAGCCTCGATGGAAAAATAAAACCT 857
Query 739 GTTGTTGAGTTCCTTCTAGACCTTGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 798
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 858 GTTGTGGAATTCCTTCTAGACCTCGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 917
Query 799 AAACGTCCACAGATCTGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 858
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AAACGCCCACAGATATGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 977
Query 859 CTTGAGACACTTGGCATTGATAAGAATCAGTGGGCAAAGATCATTTACCGTTTCCCAGCA 918
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||
Sbjct 978 CTTGAGACACTTGGCATTGACAAGAACCAATGGGCAAAGATCATTTCCCGTTTCCCAGCC 1037
Query 919 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCCCAAACCGGT 978
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1038 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCACAAACTGGT 1097
Query 979 CTCACAGAAGAACAGATTGGGAGAATCCTAACCCGCTGTCCTAACATAATGAGTTACAGT 1038
||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1098 CTCACAGAAGAACAGATAGGGAGAATCCTAACCCGATGTCCAAACATCATGAGTTACAGT 1157
Query 1039 GTCGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1098
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GTAGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1217
Query 1099 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCT 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCA 1277
Query 1159 GTAACAGAGTTCTTCTTGGAAAAAGGTTTTGGTTTAGATGAGATTGGGATCATGATCTCC 1218
||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1278 GTAACAGAGTTCTTCCTCGAAAAGGGTTTTGGTTTAGATGAAATTGGAATCATGATCTCT 1337
Query 1219 AGATATGGAGCTTTGTACACTTTCAGCTTGAAAGAGAATCTCATGCCGAAATGGGATTAC 1278
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1338 AGATATGGAGCTTTGTACACATTCAGCTTGAAAGAGAATGTCATGCCGAAATGGGATTAC 1397
Query 1279 TTTCAGACAATGGATTATCCGCAATCCGAGCTCGTGAAGTTCCCGCAGTTTTTTGGGTAC 1338
|||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1398 TTTCAGACAATGGACTATCCAAAATCCGAGCTTGTGAAGTTCCCTCAGTTTTTTGGGTAC 1457
Query 1339 AGTTTACAAGAGAGGATCAAGCCGAGATACGAGCTGGTGAAGAGAAGTGGAGTGAGACTG 1398
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1458 AGTTTACAAGAGAGGATCAAGCCGAGATATGAGCTGGTTCAGAGAAGTGGAGTGAGACTG 1517
Query 1399 CTGTTGAACCAGGTTTTGTCGCTCTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1458
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1518 CTGTTGAACCAGGTTTTATCGCTGTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1577
Query 1459 ATGATGAAACTTGTGTCTAATAACGTAATTGCTAAACAAAGTAGTGGTGGTTTGTTGTGA 1518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1578 ATGATGAAACTTGTGTCTAATAACGTAATTGCTGAACAAAGTAGTGGTGGTTTGTTGTGA 1637
Query 1519 ATGTTTTAGTTTTAGAGTAAT 1539
|||||||||||||||||||||
Sbjct 1638 ATGTTTTAGTTTTAGAGTAAT 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5