BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946921
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14580.1 | Symbols: CIPK4, SnRK3.3 | CBL-interacting protein... 1953 0.0
> AT4G14580.1 | Symbols: CIPK4, SnRK3.3 | CBL-interacting protein
kinase 4 | chr4:8367887-8369167 REVERSE LENGTH=1281
Length=1281
Score = 1953 bits (1057), Expect = 0.0
Identities = 1210/1283 (94%), Gaps = 13/1283 (1%)
Strand=Plus/Plus
Query 28 ATGGAATCTCCAAATCCAAAATCACCGGAAAACCCCTCAGGGACAGTTCTTCTCGGTAAA 87
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 1 ATGGAATCTCCATATCCAAAATCACCGGAAAAAATCACAGGGACAGTTCTTCTCGGAAAA 60
Query 88 TACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCCAAAGTCCATGTAGCTCGTTCA 147
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCTAAAGTCCATGTAGCTCGTTCC 120
Query 148 ATCTCCACCGGCGAACTCGTAGCTATCAAAATCATCGATAAG-AAGAAAACCATAGATTC 206
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 121 ATCTCCACCGGCGAACTCGTAGCTATCAAAATCATCGACAAGCAA-AAAACCATAGATTC 179
Query 207 CGGTATGGAGCCGAGAATCATCCGAGAGATCGAAGCGATGCGTCGTCTCCACCACCACCC 266
|||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||
Sbjct 180 CGGTATGGAGCCGAGAATAATCCGAGAGATCGAAGCGATGCGCCGCCTCCACAACCACCC 239
Query 267 AAACGTCCTCAAAATCCACGAAGTTATGGCCACTAAATCCAAGATCTACCTCGTCGTCGA 326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 AAACGTCCTCAAAATCCACGAAGTCATGGCCACTAAATCCAAGATCTACCTCGTCGTCGA 299
Query 327 ATACGCCGCCGGAGGAGAGCTTTTCTCCAAACTCAACCGATTCGGCCGCCTTAACGAATC 386
|||||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||
Sbjct 300 ATACGCCGCCGGAGGAGAACTCTTCACCAAACTCATCCGATTCGGCCGCCTTAACGAATC 359
Query 387 GGCGGCGCGTCGTTATTTCCAACAACTCGCCTCCGCTCTCAGTTTCTGCCACCGCGACGG 446
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GGCGGCGCGTCGTTATTTCCAACAACTCGCCTCCGCGCTCAGTTTCTGCCACCGCGACGG 419
Query 447 AATCGCTCATCGTGACGTTAAGCCACAAAATCTCCTCCTTGATAAGCAAGGAAACCTCAA 506
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 AATCGCTCATCGCGACGTGAAGCCACAGAATCTCCTCCTTGATAAGCAAGGAAACCTCAA 479
Query 507 GGTCTCCGACTTTGGTTTATCTGCTTTACCGGAGCATCGTAA-TAGTGACGGATTGCTTC 565
|||||||||||||||| |||| ||||||||||||||||| || || | ||||||||||||
Sbjct 480 GGTCTCCGACTTTGGTCTATCGGCTTTACCGGAGCATCG-AAGTAATAACGGATTGCTTC 538
Query 566 ACACGGCTTGTGGCACGCCGGCTTATACAGCGCCGGAAGTAATTGCTCAGAGAGGTTACG 625
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 ACACGGCATGTGGCACACCGGCTTATACAGCACCGGAAGTAATTGCTCAGAGAGGTTACG 598
Query 626 ACGGTGCTAAAGCTGATGCTTGGTCGTGTGGTGTGTTTCTCTTTGTTCTTCTTTCTGGTT 685
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 ACGGTGCTAAAGCTGATGCGTGGTCGTGTGGTGTGTTTCTCTTTGTTCTTCTTGCTGGTT 658
Query 686 ACGTTCCTTTCGATGATTCCAACATTGTTTCTATGTATAGGAAGATTCACAAAAGAGATT 745
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 659 ACGTTCCTTTCGATGATGCCAACATTGTTGCTATGTATAGGAAGATTCATAAAAGAGATT 718
Query 746 ACCGGTTTCCGAGCTGGATCTCGAAACCGGCACGATCTATTATCTATAAGTTGCTTGATC 805
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 719 ACCGGTTTCCGAGCTGGATCTCGAAACCGGCTCGATCTATTATATATAAGTTGCTTGATC 778
Query 806 CGAATCCGGAGACGAGGATGAGTATAGAAGCTGTGATTGGAACGGCATGGTTTCAAAAAT 865
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 779 CGAATCCGGAGACGAGGATGAGTATAGAAGCTGTGATGGGAACGGTTTGGTTTCAAAAAT 838
Query 866 CTTTAGAGATTTCGGAATTTCAGACTAGTGTGTTTGACTTGGATCGGTTTCTTGAGAAAG 925
|| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 839 CTCTAGAGATTTCGGAGTTTCAGTCTAGTGTGTTTGAGTTGGATCGGTTTCTTGAGAAAG 898
Query 926 AAGCGAAGTCGAGTAATCCGATTACGGCGTTTGATTTGATCTCGTTGTCATCGGGATTGG 985
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 AAGCGAAGTCGAGCAATGCGATTACTGCGTTTGATTTGATCTCGTTGTCATCGGGATTGG 958
Query 986 ATCTTTCGGGGTTGTTTGAGAGGAGGAAGAGGAAAGAGAAGAGGTTTACGGCGAGAGTGT 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATCTTTCGGGGTTGTTTGAGAGGAGGAAGAGGAAAGAGAAGAGGTTTACGGCGAGAGTGT 1018
Query 1046 CGGCGGAAAGAGTGGTGGAGAAGGCAGAGACGATAGGGGAAAAGTTAGGGTTTAGAGTGC 1105
||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1019 CGGCGGAAAGAGTGGTGGAGAAGGCGGGGATGATAGGGGAAAAGTTAGGGTTTAGAGTGG 1078
Query 1106 AGAAGAAGGAAGAGGCGAGGGTGGTGGGATTGGGAAAAGGAAGAACCGCGGTGGTTGTTG 1165
|||||||||||||| | | ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1079 AGAAGAAGGAAGAGACTAAGGTGGTGGGATTGGGAAAAGGAAGAACTGCGGTGGTGGTTG 1138
Query 1166 AGGTGGTGGAGCTGGCGGAAGGGTTGGTTGTGGCGGAGGTGAAGGT-G-GC-GGAGGGTG 1222
||||||||||| | ||||||||||||||||||||||| |||||||| | | ||| ||||
Sbjct 1139 AGGTGGTGGAGTTTGCGGAAGGGTTGGTTGTGGCGGATGTGAAGGTTGTGGTGGAAGGTG 1198
Query 1223 AAGAGGAGGAGGAGGAG----A--CTCATTGGTCGGAGCTAATTGTAGAGCTTGAGGAGA 1276
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAGAGGAGGAGGAGGAGGTGGAGTCTCATTGGTCGGAGCTAATTGTAGAGCTTGAGGAGA 1258
Query 1277 TTGTGCTCTCATGGCACAATTGA 1299
|||||||||||||||||||||||
Sbjct 1259 TTGTGCTCTCATGGCACAATTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5