BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946923 Length=549 Score E Sequences producing significant alignments: (Bits) Value AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci... 893 0.0 AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ... 339 2e-92 AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptiona... 217 1e-55 > AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible | chr4:8361058-8361986 FORWARD LENGTH=837 Length=837 Score = 893 bits (483), Expect = 0.0 Identities = 528/550 (96%), Gaps = 1/550 (0%) Strand=Plus/Plus Query 1 TTAAAGTATAGTGAGAGAAAATGGAAGTCATCAATGGGCTTAACCTTAAGGACACCGAGC 60 ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| Sbjct 105 TTAAAGTATAGTGAGAGAATATGGAAGTCACCAATGGGCTTAACCTTAAGGACACAGAGC 164 Query 61 TTCGTTTGGGATTACCTGGAGCacaagaagaacaacaacaagaagtttcttgcgtcagaa 120 |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| Sbjct 165 TTCGTTTGGGATTACCCGGAGCACAAGAAGAACAACAACTAGAACTTTCTTGCGTCAGAA 224 Query 121 gcaacaacaagcgaaagaacaacGACTCAAAAGAAGAATCTGCTCCTCCTCCTGCCAAAA 180 ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 225 GCAACAACAAGCGCAAGAACAACGACTCAACAGAAGAATCTGCTCCTCCTCCTGCAAAAA 284 Query 181 CACAAATCGTGGGATGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 240 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 285 CACAAATCGTTGGATGGCCTCCAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 344 Query 241 TTAGTTATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGA 300 | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 345 TGAGTTATGTGAAAGTGAGTATGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGA 404 Query 301 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAG 360 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 405 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTAGAGAACATGTTCAAGTTCACAGTAG 464 Query 361 GTGAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACA 420 |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 465 GTGAATATTCCGAGAGAGAAGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACA 524 Query 421 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 584 Query 481 AAAAACTCAGAATCATGAAAGGATCTGAAGTTCCTCCTGCCTTATGATCCATTGTCTCAA 540 ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 585 AAAAACTCAGAATCATGAAAGGATCCGAAGCTCCTACTGCCTTATGATCCATTGTCTCAA 644 Query 541 A-CACCTTTT 549 | |||||||| Sbjct 645 AACACCTTTT 654 > AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 | chr3:8180768-8181800 REVERSE LENGTH=941 Length=941 Score = 339 bits (183), Expect = 2e-92 Identities = 404/505 (80%), Gaps = 37/505 (7%) Strand=Plus/Plus Query 31 TCAATGGGCTTAACCTTAAGGACACCGAGCT-TCGT-TTGGGATTACCTGG-AGCaca-a 86 |||| | |||||||||||||||||| ||||| | || || |||||||| || || ||| | Sbjct 132 TCAACGAGCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCCGGAAGAACAGA 189 Query 87 gaag----aacaacaacaagaagtttcttgcgtcagaagcaacaacaagcg---a---aa 136 |||| || || ||||||| ||||||||||| | ||| ||||||||||| | | Sbjct 190 GAAGATCAAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGA 249 Query 137 gaacaacGAC-TCA-AAAGAAGAATCTGCTCCTCCTCCTGCCAAAACACAAATCGTGGGA 194 | | ||| | | | |||||||| | || | |||||| ||||||| |||||||| || Sbjct 250 GGA-AAC-TCGTGATGAAGAAGAA--T-CTACACCTCCTACCAAAACTCAAATCGTTGGT 304 Query 195 TGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTTAGTTATGTGAAA 254 ||||| ||| |||||||| ||||||| ||||||||| | || || || |||||| Sbjct 305 TGGCCACCAGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAA 358 Query 255 GTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGATGTACAAAAACTAT 314 ||||||||||||||||| || || || || || || |||||||||| ||||||||||| Sbjct 359 GTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATCGATCTCAAGACATACAAAAACTAC 418 Query 315 CCAGAGCTTCTCAAAGCACTCGAGAACATGTTC-AAGTTCACAG-TAGGTGAATATTCG- 371 || |||||||||||||| | ||||| |||||| ||| ||| | | |||||||||| | Sbjct 419 CCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAAG-TCA-TGATTGGTGAATATT-GT 475 Query 372 GAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACAAAGATGGAGAT 431 || |||||||| ||||||||||| ||||||||||| || || ||||| |||||||| || Sbjct 476 GAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGAC 535 Query 432 TGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAG 490 ||||||||||| ||||||||||||||||||||||||||||| |||||| || | |||||| Sbjct 536 TGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAG 594 Query 491 AATCATGAAAGGATCTGAAGTTCCT 515 ||||||||| ||||| || | |||| Sbjct 595 AATCATGAAGGGATCCGACGCTCCT 619 > AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550233-17551581 FORWARD LENGTH=1168 Length=1168 Score = 217 bits (117), Expect = 1e-55 Identities = 224/274 (82%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 246 TATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAA-GATGTA 304 ||||||||||| |||||||| || || |||||||| | || |||||||| || |||||| Sbjct 500 TATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGAAGATAGATCT-AACGATGTA 558 Query 305 CAAA-AACTATCCAGAGCTT-CTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAGGT 362 ||| || ||||||||| || | ||| |||| || |||||||| || ||| | || || Sbjct 559 TAAACAA-TATCCAGAG-TTGATGAAATCACTTGAAAACATGTTTAAATTCTCTGTGGGA 616 Query 363 GAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGA-TTTGTACCTACTTATGAAGACAA 421 ||||||| || |||||||| || ||||| ||| || ||||||||||||||||||||||| Sbjct 617 GAATATTTTGAGAGAGAAGGATATAAAGGCTCA-GACTTTGTACCTACTTATGAAGACAA 675 Query 422 AGATGGAGATTGGATG-TTGGTCGGTGATGTTCCATGGGACATGTTCTCTT-CATCTTGT 479 |||||| ||||||||| ||| | ||||||||||| ||||| ||||| | || | |||||| Sbjct 676 AGATGGTGATTGGATGCTTGTT-GGTGATGTTCCTTGGGAGATGTT-TGTTTCGTCTTGT 733 Query 480 CAAAAA-CTCAGAATCATGAAAGGATCTGAAGTT 512 || | || || ||||||||||||||||||||| Sbjct 734 -AAGAGGCTAAGGATCATGAAAGGATCTGAAGTT 766 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26322693028 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5